RnoEX0065390 @ rn6
Exon Skipping
Gene
ENSRNOG00000000129 | Phf24
Description
PHD finger protein 24 [Source:RGD Symbol;Acc:1559864]
Coordinates
chr5:58381877-58383070:+
Coord C1 exon
chr5:58381877-58382037
Coord A exon
chr5:58382360-58382455
Coord C2 exon
chr5:58382776-58383070
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACGCTCTTGTGCCTGGCAGCAT
3' ss Score
7.45
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AACTCTCTACTGAGGCTTCTCACCGTCAAGGAGAGGGAGCGAGCTCGAGCCACCTTCCTGGCACGGGGCAGAGGGAGCACCATCAGCGAAGCAGAGTGCCACCAAGCCCGACACTCTTGGTTCTGCAAGCGCCTTGCAGAGGCTCCTTCCTGCAGCGTCAG
Seq A exon
CATCAGCCATGTGGGTCCTATAGCAGACAGCAGCCCGGCCGGCAGCAGTAGCCAGAGTCAGGAGAAGGCCCTGCTGCCCACAGAGCAGGAGTCCAG
Seq C2 exon
ATTTGTGGATTGGCCCACCTTCCTGAGAGAGAATGTCATCTACATCTTGGCTGCTCGTCCTAACAGTGGAGCGATTCACCTGAAGCCCCCAGGATAGGTGGGACAGAGAAGCTCAGTTCTGGGACGGTGGCATCCTCTCTCTCCTTTCCTTTCTTTTTCCTTTACCAACCTCTGGCACTGAGACTCATGGGAATGGGACACTGCCAACATCTTAATTTGTTATTAAGCTTTATGGCACGGAAGCCACCGTTCCCCTCACAACAGAGGCAGTATGTGTGTTGCCACACTGAGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000129_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.545 C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACACTCTTGGTTCTGCAA
R:
CTGAGCTTCTCTGTCCCACCT
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]