Special

GgaEX6048741 @ galGal4

Exon Skipping

Gene
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chrZ:8366862-8368975:+
Coord C1 exon
chrZ:8366862-8367028
Coord A exon
chrZ:8367169-8367270
Coord C2 exon
chrZ:8367383-8368975
Length
102 bp
Sequences
Splice sites
3' ss Seq
GGCACTCTGTCACCCTGCAGCAT
3' ss Score
7.57
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACTCCCTGCTGCGGCTGCTGACAGTCAAGGAGCGGGAGCGGGCACGCGCCACCTTCCTGGCCCTGGACCAGGATGGCAGTGGCTTCATCGGGGAGGGTGAGTGCCACAAGGCCCAGCACGCCTGGTTCCGCAAGCACCAAAAGGAGACACCATCCTGCAATGTCAG
Seq A exon
CATCAGCCATGTTGGGCCCATGTCAGAGAGCAGCCCGGCCAGCAGCGGCAGTGTCAAGAGCCAGGAGAAGACACTGCTGGCGTCGGAGCAGGAGGAGGCCAG
Seq C2 exon
GCCCATCGACTGGCCCAGATTCCTGAGGGAGAATGTCGCCTACATCCTGGCAGCCCGTCCCAACAGTGCCGCCATCCACCTGCAGCCGCTGGCCTAGTTCCCGGCCTACCCACCCCGGCGCCATCTTGGTTGGCGAGGCCTCCCCTGCCGCCCTGCAGAGAGCCCCGTTGCCATGGCGACCGGACCCGCACCCCATTGGCTGAGGGAAGTACCTCCCCCTTTGCTCCACCTGCCAACCCCACGCAGCTCTCCACCCTCTGCCAGTGGGGAGCCAGCAGCTGATTGGCTGTTGGGAAAGCAGCAGCTCCCCCTTTCCCCTTGCCTCAGTGTTGGATTTGCTGGGTGACGCCCGAGGGGGGTGGGTGCGGGCTGTGATTACCACAGCAGGTCCTGCCTTGGATGCAGCGCTCTGATTGGCTGGGGGATGCCTCTGGTGCCCTGGAGGCCCTGCAGTGGGGAGGCCCTGGAGGCCGTGGGGCAGAGGAGGGCTCTACCGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001900-'9-8,'9-6,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.161 A=0.857 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACACCATCCTGCAATGT
R:
GGAGCAAAGGGGGAGGTACTT
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]