BtaEX6034084 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012809 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr8:59675156-59676238:+
Coord C1 exon
chr8:59675156-59675316
Coord A exon
chr8:59675633-59675728
Coord C2 exon
chr8:59676045-59676238
Length
96 bp
Sequences
Splice sites
3' ss Seq
CATGTCTTTGTACCCAACAGTGT
3' ss Score
7.06
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AACTCTCTGTTAAGGCTTCTAACAGTCAAGGAGCGGGAGCGAGCCCGAGCCACCTTCCTGGCCCGGGGCAGCGGGAGCACGATCAGCGAGGCTGAATGCCACCGTGCCCAGCACTCTTGGTTCTGCAAACGCCCCATTGAGGCTCCTTCCTGCAGTGTCAG
Seq A exon
TGTCAGCCATGTGGGTCCCATAGCAGACAGCAGCCCAGCCAGCAGCAGCAGCAAGAGTCAGGACAAGGCCCCACTGCCCACAGAGCCTGAGTCCAG
Seq C2 exon
ATTCGTGGATTGGCCTACCTTCCTGCAGGAGAGTGTCATCTACATCTTGGCTGCTCGCCCCAACAGTTTGGCCATTCACCTGAAACCCCCAGGATAGCATGGAGCAGAAAAGCTCAGTTTGGGGACAGTGGCATTCTCTCCCTCCTTTCATTTCTCCCTTTCCCCACTAACCTCTGGTACTGAGACTTCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012809-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.636 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGAGGCTCCTTCCTGCAG
R:
AGGAGGGAGAGAATGCCACTG
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]