GgaEX7005081 @ galGal4
Exon Skipping
Gene
ENSGALG00000027392 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
Coordinates
chr5:504605-505229:+
Coord C1 exon
chr5:504605-504850
Coord A exon
chr5:504925-505045
Coord C2 exon
chr5:505126-505229
Length
121 bp
Sequences
Splice sites
3' ss Seq
CGTCCCCTCTGTCCCCACAGGTG
3' ss Score
14.75
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTGAACTTCAACGAGCCTCTGTCCATGCTGCAACGCCTGACGGAGGACCTGGAGTACCACGAGCTGCTCGACCGCGCGGCCAAATGCGAGAGCTCGCTGGAGCAGCTCTGCTACGTGGCTGCCTTCACTGTCTCCTCCTACTCCACCACCGTCTTCCGCACCAGCAAACCCTTCAATCCACTCCTGGGGGAGACCTTCGAGCTGGACCGCCTGGAGGAGAACGGTTACCGCTCCCTGTGTGAGCAG
Seq A exon
GTGAGCCACCACCCGCCGGCTGCCGCACACCACGCCGACTCCAAGCATGGCTGGACGCTGCGCCAGGAGATCAAAATCACCAGCAAGTTCCGGGGGAAGTACCTCTCCATCATGCCTCTGG
Seq C2 exon
GCACCATCCACTGCGTCTTCCATGCGTCCGGCAACCACTACACGTGGAAAAAGGTCACCACCACCGTGCACAACATCATCGTGGGGAAGCTGTGGATCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027392-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
PF0123713=Oxysterol_BP=FE(10.6=100)
C2:
PF0123713=Oxysterol_BP=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTACCACGAGCTGCTC
R:
TGGTGACCTTTTTCCACGTGT
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]