MmuEX0033180 @ mm9
Exon Skipping
Gene
ENSMUSG00000024687 | Osbp
Description
oxysterol binding protein [Source:MGI Symbol;Acc:MGI:97447]
Coordinates
chr19:12058394-12062942:+
Coord C1 exon
chr19:12058394-12058639
Coord A exon
chr19:12058882-12059002
Coord C2 exon
chr19:12062839-12062942
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCACACCTGATCTCTTAAAGGTG
3' ss Score
7.35
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG
Seq A exon
GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG
Seq C2 exon
GTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024687_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
PF0123713=Oxysterol_BP=FE(10.6=100)
C2:
PF0123713=Oxysterol_BP=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTTCAGCGCCTTACTGA
R:
GCCCAGTTGAGTGGAAAATGC
Band lengths:
256-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: