RnoEX0062429 @ rn6
Exon Skipping
Gene
ENSRNOG00000021057 | Osbp
Description
oxysterol binding protein [Source:RGD Symbol;Acc:1308069]
Coordinates
chr1:228412855-228419305:+
Coord C1 exon
chr1:228412855-228413100
Coord A exon
chr1:228413344-228413464
Coord C2 exon
chr1:228419202-228419305
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCACACCTAATTTCTTAAAGGTG
3' ss Score
6.89
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAATACCATGAGCTGTTAGACCGAGCTGCCAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTGGCAGCCTTCACCGTTTCCTCCTATTCCACTACTGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTAGACCGACTGGAGGAGAATGGGTATCGATCCCTCTGTGAGCAG
Seq A exon
GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG
Seq C2 exon
GTACCATCCACTGCATTTTCCACGCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021057-'20-13,'20-10,21-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
PF0123713=Oxysterol_BP=FE(10.6=100)
C2:
PF0123713=Oxysterol_BP=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTTCAGCGCCTTACTGA
R:
TGCGTGGAAAATGCAGTGGAT
Band lengths:
249-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]