BtaEX6060980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020332 | OSBP
Description
oxysterol-binding protein 1 [Source:RefSeq peptide;Acc:NP_001192899]
Coordinates
chr15:84118444-84123294:-
Coord C1 exon
chr15:84123049-84123294
Coord A exon
chr15:84122665-84122785
Coord C2 exon
chr15:84118444-84118547
Length
121 bp
Sequences
Splice sites
3' ss Seq
GCGCTCCCGGTCTCTTCCAGGTG
3' ss Score
10.47
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GTGAACTTTAACGAGCCCTTGTCCATGCTTCAGCGCCTCACTGAAGACCTGGAGTACCACGAGCTGTTGGACCGGGCCGCCACGTGCGAGAACTCTCTAGAACAGCTCTGTTATGTTGCAGCTTTCACCGTGTCCTCCTACTCCACCACTGTCTTCCGCACCAGCAAGCCGTTCAACCCACTCCTCGGGGAGACCTTTGAGCTGGACCGGTTAGAGGAGAATGGCTACCGATCCCTCTGTGAGCAG
Seq A exon
GTGAGCCACCATCCGCCCGCGGCTGCACACCATGCCGAGTCCAGAAACGGCTGGACGCTGCGGCAGGAGATCAAGATTACCAGCAAGTTTCGCGGCAAATACCTCTCCATTATGCCCCTCG
Seq C2 exon
GGAGCATCCACTGTATTTTCCATGCGACTGGGCACCACTACACTTGGAAGAAAGTGACCACAACGGTGCACAACATCATCGTGGGCAAACTGTGGATTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020332-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
PF0123713=Oxysterol_BP=FE(10.6=100)
C2:
PF0123713=Oxysterol_BP=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTACCACGAGCTGTTG
R:
CTTCCAAGTGTAGTGGTGCCC
Band lengths:
248-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]