DreEX0052709 @ danRer10
Exon Skipping
Gene
ENSDARG00000004634 | osbp
Description
oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
Coordinates
chr1:52046364-52048506:+
Coord C1 exon
chr1:52046364-52046609
Coord A exon
chr1:52048071-52048191
Coord C2 exon
chr1:52048403-52048506
Length
121 bp
Sequences
Splice sites
3' ss Seq
ATCTTTATTTCCTTCTTCAGGTA
3' ss Score
11.59
5' ss Seq
TGGGTAAAA
5' ss Score
3.28
Exon sequences
Seq C1 exon
GTGAACTTCAACGAGCCGCTCTCCATGCTGCAGCGTCTCTCTGAGGATCTGGAGTACTATGAGCTGCTGGATCGAGGAGCAAAGTGCCAGAGCTCTCTGGAGCAGATGTGTTACGTGGCCGCTTTCACCGTGTCATCGTACTCCACTACAGTTCACCGCACCGGCAAACCCTTCAACCCGCTGCTGGGAGAGACCTTTGAGCTGGACCGCCTGCAGGAGAGCGGGTACAGGTCCCTCTGTGAGCAG
Seq A exon
GTAAGCCATCATCCTCCAGCTGCTGCCCATCATGCGATCTCTGAGCGAGGCTGGACCCTGAGACAGGAGATCGCGCTGGCCAGCAAGTTCAGGGGCAAATACCTCTCCATTATGCCTCTGG
Seq C2 exon
GTTCTATTCACTGTATCTTTGAGAAGAGCAACAATCACTACACCTGGAAGAAAGTCACAACCACAGTGCACAATATCATAGTCGGGAAACTCTGGATAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004634-'14-13,'14-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(20.0=100)
A:
PF0123713=Oxysterol_BP=FE(10.5=100)
C2:
PF0123713=Oxysterol_BP=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGATCGAGGAGCAAAG
R:
TGTGCACTGTGGTTGTGACTT
Band lengths:
255-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]