GgaEX7006000 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:19036158-19038539:+
Coord C1 exon
chr7:19036158-19036295
Coord A exon
chr7:19037780-19037884
Coord C2 exon
chr7:19038269-19038539
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTTCTTATTTTACCTT
3' ss Score
1.58
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTAGGGAAGCAGCCCATGTACGAAGATAACTTATACATGTATCTTTACTTTGTTGCCTTTATCATCTTTGGATCCTTTTTCACCCTAAACTTGTTCATTGGTGTCATCATAGATAACTTCAACCAGCAAAAAAAGAAG
Seq A exon
CTTGGAGGACAGGACATTTTTATGACAGAAGAACAAAAGAAGTATTACAATGCAATGAAGAAGTTAGGTTCCAAGAAACCACAAAAACCTATACCTAGGCCAGCG
Seq C2 exon
AATAAATTGCAAGGTTTGGTGTTTGATATTGTAACAAAGCAAGCATTTGACATCGGCATTATGGTCCTCATCTGTCTTAACATGGTCACCATGATGATAGAAACAGATGACCAGAGTGAACTTATGCAAAATATTTTATACTGGATTAACTTTGTCTTTGTTGTCCTTTTCACTGGAGAATGTGTCTTAAAACTGTTCTCACTCCGTTATTATTACTTCACTGTTGGCTGGAATATCTTTGATTTTGTGGTTGTTATTCTTTCAATAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793-'21-22,'21-21,23-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.3=76.1)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.4=47.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCAGCCCATGTACGAAG
R:
AGTTCACTCTGGTCATCTGTTTCT
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]