GgaEX7006714 @ galGal4
Exon Skipping
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4530966-4536950:-
Coord C1 exon
chr8:4536786-4536950
Coord A exon
chr8:4532228-4532454
Coord C2 exon
chr8:4530966-4531202
Length
227 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTCAATGAAATAGGTG
3' ss Score
6.01
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ACGGAAAATGATGAGAATGGCCAAGCGGACAATTTTTCAATGGACCCCCAATTGGAGAGACAGGTGGAGACGATTCGAAATCTGGTGGACTCCTACATGTCTATTATCAACAAATGTATCCGAGACTTGATACCGAAAACAATCATGCACCTTATGATCAATAAC
Seq A exon
GTGAAAGAATTTATCAACGCTGAGCTCCTGGCTCACCTGTATTCTTCTGAGGACCAAAATACTCTAATGGAGGAATCAGCTGAGCAGGCACAGAGGCGAGATGAAATGCTCCGCATGTACCAAGCTCTAAAGGAAGCCCTAGCAATCATTGGTGATATCAGCACTAGCACTGTGTCAACCCCTGCACCACCTCCTGTAGACGATTCTTGGCTTCAGCAGGCCCGCAG
Seq C2 exon
GTCGCCTCCTCCAAGTCCCTCAACTCAGAGGAGGCCTACATTAAATAATCCTCCCACCAGACCTTTATCTGGCCGAGGACCTGCTCCTGCAATCCCATCTCCAGGCCCTCAGTCAGGGGCTCCCCCGGTCCCATTCCGCCCAGGACCATTGCCACCATTTCCAAGTGGTGGTGAAGCCCATGGAGGACCTCCCCAAGTTCCTTCTCGGCCGACGCGGGCTCCTCCCAGTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-'49-31,'49-30,50-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=0.633 C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PU(41.3=69.1)
A:
PF0221213=GED=PD(56.5=68.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGCGGACAATTTTTCA
R:
AAATGGTGGCAATGGTCCTGG
Band lengths:
307-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]