MmuEX6028700 @ mm9
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:163940999-163950123:-
Coord C1 exon
chr1:163949959-163950123
Coord A exon
chr1:163941832-163942058
Coord C2 exon
chr1:163940999-163941235
Length
227 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTTTTCCTTACAGGTT
3' ss Score
13.07
5' ss Seq
GAGGTTAGG
5' ss Score
4.36
Exon sequences
Seq C1 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTTTCCATGGACCCACAGTTGGAGAGGCAAGTGGAGACCATACGCAACCTAGTAGACTCCTACATGTCAATAATCAACAAATGCATCCGAGACTTAATTCCAAAAACAATAATGCATCTTATGATCAATAAC
Seq A exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCTTCTGAGGACCAGAACACTCTGATGGAAGAGTCCGCGGAGCAGGCTCAGCGCCGAGATGAGATGCTCCGAATGTACCAAGCCCTGAAAGAAGCTCTCGCAATCATTGGTGACATCAACACGGCCACGGTGTCCACCCCAGCCCCACCTCCAGTCGATGACTCCTGGCTCCAACACTCCAGGAG
Seq C2 exon
GTCACCTCCTCCGAGCCCCACCACCCAACGAAGGCTGACGATAAGTGCTCCCCTCCCAAGGCCCACATCTGGCCGTGGGCCAGCTCCCGCTATCCCCTCTCCAGGCCCCCACTCCGGAGCTCCCCCAGTTCCATTCCGTCCTGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTTTGGAGCCCCTCCGCAAGTTCCGTCCAGGCCCACCAGGGCACCCCCCAGTGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-'27-29,'27-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=0.603 C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PU(41.3=69.1)
A:
PF0221213=GED=PD(56.5=68.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTTGGAGAGGCAAGTGG
R:
AGGAGTCACTGCTGTTGGGAA
Band lengths:
298-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: