MmuEX6028700 @ mm10
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:162010868-162019992:-
Coord C1 exon
chr1:162019828-162019992
Coord A exon
chr1:162011701-162011927
Coord C2 exon
chr1:162010868-162011104
Length
227 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTTTTCCTTACAGGTT
3' ss Score
13.07
5' ss Seq
GAGGTTAGG
5' ss Score
4.36
Exon sequences
Seq C1 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTTTCCATGGACCCACAGTTGGAGAGGCAAGTGGAGACCATACGCAACCTAGTAGACTCCTACATGTCAATAATCAACAAATGCATCCGAGACTTAATTCCAAAAACAATAATGCATCTTATGATCAATAAC
Seq A exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCTTCTGAGGACCAGAACACTCTGATGGAAGAGTCCGCGGAGCAGGCTCAGCGCCGAGATGAGATGCTCCGAATGTACCAAGCCCTGAAAGAAGCTCTCGCAATCATTGGTGACATCAACACGGCCACGGTGTCCACCCCAGCCCCACCTCCAGTCGATGACTCCTGGCTCCAACACTCCAGGAG
Seq C2 exon
GTCACCTCCTCCGAGCCCCACCACCCAACGAAGGCTGACGATAAGTGCTCCCCTCCCAAGGCCCACATCTGGCCGTGGGCCAGCTCCCGCTATCCCCTCTCCAGGCCCCCACTCCGGAGCTCCCCCAGTTCCATTCCGTCCTGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTTTGGAGCCCCTCCGCAAGTTCCGTCCAGGCCCACCAGGGCACCCCCCAGTGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-'54-40,'54-39,58-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=0.605 C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PU(41.3=69.1)
A:
PF0221213=GED=PD(56.5=68.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTTGGAGAGGCAAGTGG
R:
AGGAGTCACTGCTGTTGGGAA
Band lengths:
298-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types