RnoEX0029080 @ rn6
Exon Skipping
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:79927632-79936582:-
Coord C1 exon
chr13:79936418-79936582
Coord A exon
chr13:79928400-79928626
Coord C2 exon
chr13:79927632-79927868
Length
227 bp
Sequences
Splice sites
3' ss Seq
TCACCTGGTTTTTCTCACAGGTT
3' ss Score
10.64
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
Exon sequences
Seq C1 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCAAGTGGAGACTATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGACCTAATTCCAAAAACAATAATGCACCTTATGATCAATAAT
Seq A exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCCTCTGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGCTCAGCGCCGGGATGAGATGCTCCGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGCGACATCAACACGGTCACTGTGTCCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGCATTCCAGAAG
Seq C2 exon
GTCACCTCCTCCAAGCCCCACCACCCAAAGAAGGCTGACTCTAAGTGCTCCCCTCCCGAGGCCCGCATCTAGCCGTGGACCAGCTCCTGCCATTCCCTCTCCAGGCCCCCACTCTGGGGCTCCCCCAGTCCCATTCCGTCCAGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTACGGAGCCCCTCCACAGGTTCCATCCAGGCCCACAAGGGCACCCCCCAGTGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490-'44-37,'44-34,46-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.285 A=0.557 C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PU(41.3=69.1)
A:
PF0221213=GED=PD(56.5=68.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTTCTCCATGGACCCGC
R:
AAAGGAGGTAATGGGCCTGGA
Band lengths:
296-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]