GgaEX7009055 @ galGal4
Exon Skipping
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10237437-10241732:+
Coord C1 exon
chr20:10237437-10237963
Coord A exon
chr20:10241262-10241417
Coord C2 exon
chr20:10241611-10241732
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATCCTCGCTGCCGTCCGCAGCTG
3' ss Score
9.03
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
TTTTTTCTCTCTCTCTCGGGGTTTTTGTTTTTTTTTTTCCTTCCCTCTCAAGGGCTGCCGCGGGACTCAGCCTGGCGATAAAAGGCTGCGGGGCGGCCGGAGGCGGCTCAGAGAGCAGCGGGAGGCGATGCCGGCCCCGCAGCGCTGCGCCCGCTGAGTGCCGGGGGTCCGGGGGGGGTCCGGGGGGGCTCCGTGCGCCCCGCGCCATGCGCGCGCTCAGCCTCGTGGCGTTGGCAGCGCTGTGCACAGCCGCATCCCAGCGTAGGGCGCTGGACGTGGGCAGCCGCCGGCGTTGGCACCGCGTGCAGCACGGGCACTGCAGCTACACCTTCGTGCTGCCCGAGGCCGAGCCGTCGCCGTGCCCGCTCGCCGCCCCCGGTCCCGTTAACGCGCTGCAGCGGGATTCGCCGTCCGGCAACGGGCACGCTGCCCGCGGGGCTGCCCAGCGCCTGCAGCACCTGGAGAGGATCCTGGAGAACAGCACGCAGTGGCTGCTGAAG
Seq A exon
CTGGAGAGCTCCATCCAGAGCAGCATGAAGCCGGAGATGGCGCGGCTGCGGCAGACGGCGGTGCAGAACCACACGGCCACCATGCTGGAGATCGGCAGCTCCCTGCTGAACCGCAGCGCTGAGCAGAGCCGCAAGCTCACCGACGTGGAGGCGCAG
Seq C2 exon
GTGCTGAACCAGACGTCACGCATCGAGATGCAGCTGCTGGAGAACTCCCTGTCCACCACCAAGCTGGAGAAGCAGCTGCTGGTGCAGACAAACGAGATCCACCAGCTGCAGAGCAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.519 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF032458=Phage_lysis=PU(36.1=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAGCTACACCTTCGTG
R:
GGTGGACAGGGAGTTCTCCAG
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]