MmuEX0004871 @ mm10
Exon Skipping
Gene
ENSMUSG00000027460 | Angpt4
Description
angiopoietin 4 [Source:MGI Symbol;Acc:MGI:1336887]
Coordinates
chr2:151911210-151927185:+
Coord C1 exon
chr2:151911210-151911667
Coord A exon
chr2:151925387-151925542
Coord C2 exon
chr2:151927064-151927185
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGCCCTCTGTTCCCCTACAGCTG
3' ss Score
10.55
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTACAGCAGTTGGACTCTGCATCACAGGCCCCAGCTGCACAGCACATCTGGGCGAGGGCTGGCTGTGAGGAGTTACCTGTCCTGGTACCTGACAAGACCACCTCACCACCACTTGGTCTCAGATGCTCTGCCAGCCAGCTATGCTACTAGATGGCCTCCTCCTGCTGGCCACCATGGCTGCAGCCCAGCACAGAGGGCCAGAAGCCGGTGGGCACCGCCAGATTCACCAGGTCCGGCGTGGCCAGTGCAGCTACACCTTTGTGGTGCCGGAGCCTGATATCTGCCAGCTGGCGCCGACAGCGGCGCCTGAGGCTTTGGGGGGCTCCAATAGCCTCCAGAGGGACTTGCCTGCCTCGAGGCTGCACCTAACAGACTGGCGAGCCCAGAGGGCCCAGCGGGCCCAGCGTGTGAGCCAGCTGGAGAAGATACTAGAGAATAACACTCAGTGGCTGCTGAAG
Seq A exon
CTGGAGCAGTCCATCAAGGTGAACTTGAGGTCACACCTGGTGCAGGCCCAGCAGGACACAATCCAGAACCAGACAACTACCATGCTGGCACTGGGTGCCAACCTCATGAACCAGACCAAAGCTCAGACCCACAAGCTGACTGCTGTGGAGGCACAG
Seq C2 exon
GTCCTAAACCAGACATTGCACATGAAGACCCAAATGCTGGAGAACTCACTGTCCACCAACAAGCTGGAGCGGCAGATGCTGATGCAGAGCCGAGAGCTGCAGCGGCTGCAGGGTCGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027460-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.423 C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGATATCTGCCAGCTG
R:
TGGACAGTGAGTTCTCCAGCA
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types