BtaEX6065870 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021811 | ANGPTL4
Description
Bos taurus angiopoietin 4 (ANGPT4), mRNA. [Source:RefSeq mRNA;Acc:NM_001076483]
Coordinates
chr13:60729756-60755697:+
Coord C1 exon
chr13:60729756-60730609
Coord A exon
chr13:60753894-60754049
Coord C2 exon
chr13:60755576-60755697
Length
156 bp
Sequences
Splice sites
3' ss Seq
CACCGTCTATCTCCTCACAGCTG
3' ss Score
10.55
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTATTTGGAGCAATTATAAATAGCCGCCTGGACAGAGCTTGGCCAAACAGGGCTTTGCAGCTGCGGCGGCTGTGCAGGCAAGCCTGGCCACTGTTGGCCAGCAGCGGGTGCAAACGGCACAGAGATAGGTGGTGGACAGGCCCAGCCCCAAGGCTCTGACTCAACACCCCTCGCCATCACCACATCTCTGGATGCCCTCCCCACCAGCCATGCTGCTGGGTGGCCTCCTTCTCATTGTGGCCTCTACAACTGTGGCCCAGCGGAGGGGGCAGGAGGCCGCTGGGCGCCGCCGGGCCCACCGAGTCCAGCACGGCCAATGCAGCTACACCTTCGTGCTGCCAGAGCCTGAGCCCTGCCCACCTGAGCCCGAGGCCTTTGGGGGCTCTAACAGTCTCCAGAGGGACTCCCCGGCGGCCACACTGAACCTAGGAGACTGGCCAAGCCAGCGGATGCGACAGCTGGAAAAAATGCTGGAGAACAACACGCAGTGGCTGCAGAAG
Seq A exon
CTGGAAAGGTACATCCAGATGAACCTGAGGTTGGAGCTGGCACAGGCCCAGCAGCACATGGTCCAGAACCAGACAGCCACCATGCTGGAGCTGGGCACCAGTCTCCTGACCCAGACCACCGCCCAGACCCGCAAGCTGACCGACGTGGAGGCTCAG
Seq C2 exon
GTTCTGAACCAGACGTCACGAATGGAGATCCAGCTGCTGGAGACCTCACTGTCCACCAACAAGCTGGAGAAACAGCTGCTGCTGCAGGGCCATGAGCTCCACCGGCTGCAGGGCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021811-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.573 A=0.481 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGCAGCTACACCTTCGT
R:
TGTTGGTGGACAGTGAGGTCT
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]