HsaEX6076778 @ hg19
Exon Skipping
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:487]
Coordinates
chr20:868961-896960:-
Coord C1 exon
chr20:896549-896960
Coord A exon
chr20:870856-871011
Coord C2 exon
chr20:868961-869082
Length
156 bp
Sequences
Splice sites
3' ss Seq
CAGCCCATGGTCTCCCACAGCTA
3' ss Score
4.84
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGCAGCTGCAGGCAAGCCTGGCCACTGTTGGCTGCAGCAGGACATCCCAGGCACAGCCCCTAGGGCTCTGAGCAGACATCCCTCGCCATTGACACATCTTCAGATGCTCTCCCAGCTAGCCATGCTGCAGGGCAGCCTCCTCCTTGTGGTTGCCACCATGTCTGTGGCTCAACAGACAAGGCAGGAGGCGGATAGGGGCTGCGAGACACTTGTAGTCCAGCACGGCCACTGTAGCTACACCTTCTTGCTGCCCAAGTCTGAGCCCTGCCCTCCGGGGCCTGAGGTCTCCAGGGACTCCAACACCCTCCAGAGAGAATCACTGGCCAACCCACTGCACCTGGGGAAGTTGCCCACCCAGCAGGTGAAACAGCTGGAGCAGGCACTGCAGAACAACACGCAGTGGCTGAAGAAG
Seq A exon
CTAGAGAGGGCCATCAAGACGATCTTGAGGTCGAAGCTGGAGCAGGTCCAGCAGCAAATGGCCCAGAATCAGACGGCCCCCATGCTAGAGCTGGGCACCAGCCTCCTGAACCAGACCACTGCCCAGATCCGCAAGCTGACCGACATGGAGGCTCAG
Seq C2 exon
CTCCTGAACCAGACATCAAGAATGGATGCCCAGATGCCAGAGACCTTTCTGTCCACCAACAAGCTGGAGAACCAGCTGCTGCTACAGAGGCAGAAGCTCCAGCAGCTTCAGGGCCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.423 C2=0.390
Domain overlap (PFAM):
C1:
PF119693=DcpS_C=PU(60.0=40.8)
A:
PF119693=DcpS_C=PD(37.1=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGACACTTGTAGTCCAGC
R:
GGCATCTGGGCATCCATTCTT
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)