RnoEX0009295 @ rn6
Exon Skipping
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147422095-147437942:+
Coord C1 exon
chr3:147422095-147422554
Coord A exon
chr3:147436061-147436216
Coord C2 exon
chr3:147437821-147437942
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGCCCTCTGTCTCCCTACAGCTG
3' ss Score
12.07
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCACAGCAGTGAGACTTTGCAGCCAGGTCTTCACAGGCCCCAGCTGCACAGCACATCTGGGCTGGCTGCTGGTAGTTACCTGCCCTGGTACCTCTGACAAGACCTCCTCATCACCGCTTGGTCTCGGATGCTCCGCCCGCCAGCTATGCTACTAGATGGCCTCCTCCTGCTGGCCACCATGGCTGCAGCCCAGCACAGAGGGCCAGAAGCCAGTGGGCGCCGCCAGATTCACCGGGTCCAGCACGGCCAGTGTAGCTACACCTTTGTGCTGCCTGAGCCAGATATCTGCCAGCTGGCGCCGGTGGCACCTGAGGGTTTGGGGGGCTCCAATAGCCTCCAGAGGGACTTGCCTGCCGCAAGGCACCACCTAACAGACTGGCGAGCCCAGCGGGCCCAGCGGGCCCAGCGTGTGAGCCAGCTGGAGAAGATTCTAGAGAATAACACTCAGTGGCTGCTGAAG
Seq A exon
CTGGAGCAGTCCATCCAGATGAACTTGAGGTCAGACCTGGCTCAGGCCCAACAGCACACAATCCAGAACCAGACGACCACCATGCTGGCACTGGGCGCCAACCTCATGAACCAGACCATGGCTCAGACCCACAAGCTGACTGCTGTGGAGGCACAG
Seq C2 exon
GTCCTAAACCACACATCTCGCGTGAAGACCCAAATGCTGGAGAGCTCACTGTCCACCAACAAGCTGGAGAGGCAGATGCTGATGCAGAGCCGCGAGCTGCAGCGGCTGCAGGGCCGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008-'0-1,'0-0,5-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=0.615 C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCAGATATCTGCCAGCT
R:
CAGCTTGTTGGTGGACAGTGA
Band lengths:
253-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]