GgaEX7009797 @ galGal4
Exon Skipping
Gene
ENSGALG00000013404 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr17:6708688-6713535:-
Coord C1 exon
chr17:6713451-6713535
Coord A exon
chr17:6709466-6709515
Coord C2 exon
chr17:6708688-6708801
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTACGTTCTCATTTCTTAGCTC
3' ss Score
8.46
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AACATGCTTGAGGAGCTGTTAATTCATAAGCCTGAGGACCCCATTGAGTTTATGATAGAGCATTTAAAGCAGTACAACGACGATG
Seq A exon
CTCCAAGGATTTGCATTCTCGGTCCGCCTGCTTCTGGTAAAACTACAATG
Seq C2 exon
GCAATACGGCTTTGTAAACATTTGGATGCCATACGTATCTCTCAGGAGACTTTGCTTTCCAAGGAAACATTAGCTCTGACAAAGGAAGCAAAGGCATATAAAGAAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404-'4-3,'4-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040617=ADK=PU(6.3=64.7)
C2:
PF0040617=ADK=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGGACCCCATTGAGTT
R:
TTTGCTTCCTTTGTCAGAGCT
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]