MmuEX6100033 @ mm10
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28702689-28712388:+
Coord C1 exon
chr2:28702689-28702773
Coord A exon
chr2:28709927-28709976
Coord C2 exon
chr2:28712275-28712388
Length
50 bp
Sequences
Splice sites
3' ss Seq
CAAATCTTTTTCTTCCACAGTGC
3' ss Score
9.77
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
AACATGTTGGAGCAGCTCCTGATCCACCAGCCGGAGGACCCCATCAGCTTCATGATCACTCACCTGCGCAGGAACAATGATAATG
Seq A exon
TGCCGAAGGTTGTGATATTAGGTCCGCCTGCCTCAGGGAAAACCACCATC
Seq C2 exon
GCCATGTGGCTCTGCAAACATCTAAACAGCAACCTCATCACCAAGGAGAGCTTACTAGAAAGAGAGTTTTCCCGTCTGTCTGTGGAAGCCAAGAGTTACTACCAGGTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807-'4-6,'4-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.078 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF132381=AAA_18=PU(8.8=76.5)
C2:
PF132381=AAA_18=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCCATCAGCTTCATGA
R:
CTTGGCTTCCACAGACAGACG
Band lengths:
144-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types