RnoEX0008268 @ rn6
Exon Skipping
Gene
ENSRNOG00000012761 | Ak8
Description
adenylate kinase 8 [Source:RGD Symbol;Acc:1303144]
Coordinates
chr3:7282013-7291104:+
Coord C1 exon
chr3:7282013-7282097
Coord A exon
chr3:7288733-7288782
Coord C2 exon
chr3:7290991-7291104
Length
50 bp
Sequences
Splice sites
3' ss Seq
CAAATCTTTTTCTTCCACAGTGC
3' ss Score
9.77
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
AGCATGCTGGAGCAGCTCCTGATTCACCAGCCAGAGGACCCCATCAGCTTCATGATCAGTCACCTTCGCAGGAACAACGATAATG
Seq A exon
TGCCGAGAGTTGTGATATTAGGTCCGCCTGCCTCAGGGAAAACCACCATC
Seq C2 exon
GCGATGTGGCTCTGCAAACATCTGAACAGCAACCTCATCACCAAGGAGAACTTATTAGAGAGAGAGTTTTCCCTCCTGTCTCTGGAAGCCAAGAAACACTACCAGGTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012761_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040617=ADK=PU(6.2=64.7)
C2:
PF0040617=ADK=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCCATCAGCTTCATGA
R:
GCTTCCAGAGACAGGAGGGAA
Band lengths:
140-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]