BtaEX0002984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004092 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr11:102935466-102946129:-
Coord C1 exon
chr11:102946045-102946129
Coord A exon
chr11:102939501-102939550
Coord C2 exon
chr11:102935466-102935579
Length
50 bp
Sequences
Splice sites
3' ss Seq
CAAATCTCTTTATTCCACAGTGC
3' ss Score
8.78
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
AACATGCTGGAGCAGCTCCTGATCCACCAGCCCAAGGACCCCATCCCGTTCATGATTGATCATTTGCAACGAGACAACGATTATG
Seq A exon
TGCCGAAGATTGTAATATTAGGTCCACCTGCCTCGGGGAAAACAACCATA
Seq C2 exon
GCTATGTGGCTTGCCAAACATCTGAGCACCAATCTTCTCAGCGTGGAGAGCTTGATAGCAAAGGAGTATTCCCCTCTGGCGGCAGACGCCAGGATGCATTATCAGAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004092_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040617=ADK=PU(6.3=64.7)
C2:
PF0040617=ADK=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCTCCTGATCCACCAG
R:
GCTATCAAGCTCTCCACGCTG
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development