BtaEX0002983 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004092 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr11:102939501-102949233:-
Coord C1 exon
chr11:102949150-102949233
Coord A exon
chr11:102946045-102946129
Coord C2 exon
chr11:102939501-102939550
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCCCTGTGCCCACAGAAC
3' ss Score
11.55
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATGGACGCGACCACCGCCCCTCATCGCATTCCCCCGCAAATGCCCCAGTATGGGGAGGCGAACCACATCTTCGAGTTGATGCAG
Seq A exon
AACATGCTGGAGCAGCTCCTGATCCACCAGCCCAAGGACCCCATCCCGTTCATGATTGATCATTTGCAACGAGACAACGATTATG
Seq C2 exon
TGCCGAAGATTGTAATATTAGGTCCACCTGCCTCGGGGAAAACAACCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004092_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(6.3=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCACCGCCCCTCATC
R:
TATGGTTGTTTTCCCCGAGGC
Band lengths:
127-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development