GgaEX1007219 @ galGal4
Exon Skipping
Gene
ENSGALG00000013404 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr17:6709466-6714877:-
Coord C1 exon
chr17:6714781-6714877
Coord A exon
chr17:6713451-6713535
Coord C2 exon
chr17:6709466-6709515
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCTGTTGTTTTTCAGAAC
3' ss Score
12.25
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATGGTTGCTAAGGGCCGCCATGGACGCCCCCGCCCGGCCGTGGCCGCCGTCGGTGTGCGGCTACGCGGAGCAACGGGGGGTCTTCCGGCTCCTGCAG
Seq A exon
AACATGCTTGAGGAGCTGTTAATTCATAAGCCTGAGGACCCCATTGAGTTTATGATAGAGCATTTAAAGCAGTACAACGACGATG
Seq C2 exon
CTCCAAGGATTTGCATTCTCGGTCCGCCTGCTTCTGGTAAAACTACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404-'1-2,'1-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(6.3=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTGCTAAGGGCCGC
R:
TGTAGTTTTACCAGAAGCAGGCG
Band lengths:
144-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]