RnoEX0008261 @ rn6
Exon Skipping
Gene
ENSRNOG00000012761 | Ak8
Description
adenylate kinase 8 [Source:RGD Symbol;Acc:1303144]
Coordinates
chr3:7279340-7288782:+
Coord C1 exon
chr3:7279340-7279528
Coord A exon
chr3:7282013-7282097
Coord C2 exon
chr3:7288733-7288782
Length
85 bp
Sequences
Splice sites
3' ss Seq
AAATTTGTTTGGGCCCACAGAGC
3' ss Score
6.44
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
ATGGAACCCGGGACCAGGACTCGCCACAGCAGAGGCGCTCACCGATGACGCATAGATTGGCGTCCTAGCAACGCCGTTACTAAGGAGCGGCTCGTTGTCCGAAACATGGATGCTACCTCGGCCCCGCACCGCATCCCCCCAGAAATGCCTCAGTACGGGGAAGACTACCACATCTTCGAGATGATGCAG
Seq A exon
AGCATGCTGGAGCAGCTCCTGATTCACCAGCCAGAGGACCCCATCAGCTTCATGATCAGTCACCTTCGCAGGAACAACGATAATG
Seq C2 exon
TGCCGAGAGTTGTGATATTAGGTCCGCCTGCCTCAGGGAAAACCACCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012761-'1-10,'1-6,5-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(6.2=64.7)
Main Skipping Isoform:
ENSRNOT00000017029fB861
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACGCCGTTACTAAGGAG
R:
GATGGTGGTTTTCCCTGAGGC
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]