MmuEX6100034 @ mm9
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28555684-28565496:+
Coord C1 exon
chr2:28555684-28555794
Coord A exon
chr2:28558209-28558293
Coord C2 exon
chr2:28565447-28565496
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATATCTGTTTGTGCCCACAGAAC
3' ss Score
10.8
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ACTAAGGAGCGGAGCGCTGTCGGAAACATGGATGCAACCACAGCCCCTCATCGCATTCCCCCGGAAATGCCTCAGTACGGGGAAGACTACTACATTTTCGAGATGATGCAG
Seq A exon
AACATGTTGGAGCAGCTCCTGATCCACCAGCCGGAGGACCCCATCAGCTTCATGATCACTCACCTGCGCAGGAACAATGATAATG
Seq C2 exon
TGCCGAAGGTTGTGATATTAGGTCCGCCTGCCTCAGGGAAAACCACCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807-'0-4,'0-2,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.015 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040617=ADK=PU(6.2=64.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGCTGTCGGAAACATG
R:
GATGGTGGTTTTCCCTGAGGC
Band lengths:
151-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: