MmuEX6100034 @ mm10
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28700164-28709976:+
Coord C1 exon
chr2:28700164-28700274
Coord A exon
chr2:28702689-28702773
Coord C2 exon
chr2:28709927-28709976
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATATCTGTTTGTGCCCACAGAAC
3' ss Score
10.8
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ACTAAGGAGCGGAGCGCTGTCGGAAACATGGATGCAACCACAGCCCCTCATCGCATTCCCCCGGAAATGCCTCAGTACGGGGAAGACTACTACATTTTCGAGATGATGCAG
Seq A exon
AACATGTTGGAGCAGCTCCTGATCCACCAGCCGGAGGACCCCATCAGCTTCATGATCACTCACCTGCGCAGGAACAATGATAATG
Seq C2 exon
TGCCGAAGGTTGTGATATTAGGTCCGCCTGCCTCAGGGAAAACCACCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807-'1-13,'1-2,4-13=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.011 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF132381=AAA_18=PU(8.8=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGCTGTCGGAAACATG
R:
GATGGTGGTTTTCCCTGAGGC
Band lengths:
151-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types