HsaEX6063673 @ hg19
Exon Skipping
Gene
ENSG00000165695 | C9orf98
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:26526]
Coordinates
chr9:135749727-135754164:-
Coord C1 exon
chr9:135753559-135754164
Coord A exon
chr9:135750502-135750586
Coord C2 exon
chr9:135749727-135749826
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCCCTGCACCCACAGAAC
3' ss Score
9.86
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTCCCGCGTCTGTTTTAAAGATGGGTAAACTGAGGCACAGGGAGCCGGGCCGGGGAGCACTGACAGAACCAGAAGCAGGTTCTGCCTCCCGTCCCCTCGGAGGGCCGACTTGCCCCTTCTGGGTTTCGTCGGGGGTCTCAGATACGAGGAGGCCCAGCTGGAAGCCACCTGAGGGTGTCCCCCGCTAAGATGCGCAAATGGGAAAAGCGAGGCCGGGGTTGGGGAAAGAACTTGCCCGAGCCGCAGAGCGCGTCAGCCGGGGAGGTCGGGGCGGGGGCGACCCGCGCGACCGAGGATCGGGTATCTGGGCCCGGCGCGGAGCCTGCAGGGCGGGGCCGCGGCGCGTGCTGATGACGCAGTCGGCGCGGCGGCCCTAGCGACGCGGTTACTAGGGAGCGGCGAGCCGAGACGGCTACATGGACGCCACTATCGCCCCGCACCGTATCCCCCCCGAGATGCCCCAGTACGGGGAGGAGAACCACATCTTCGAGTTGATGCAG
Seq A exon
AACATGCTGGAGCAACTCCTGATCCACCAGCCCGAAGATCCCATCCCCTTCATGATCCAGCACTTGCATAGAGACAACGACAATG
Seq C2 exon
CTGCTTTGAAGGAGCTACCAGTGCACCAGTGAAATTAGTGCTTGGTACAGCTGAGGACAGAGCCCAGAGATGCCCTGTGTGGAGGTTCAGAAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695-'0-1,'0-0,1-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.110 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATGGACGCCACTATCGC
R:
GCCTTCTGAACCTCCACACAG
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)