HsaEX0011796 @ hg19
Exon Skipping
Gene
ENSG00000165695 | C9orf98
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:26526]
Coordinates
chr9:135739052-135750586:-
Coord C1 exon
chr9:135750502-135750586
Coord A exon
chr9:135742291-135742340
Coord C2 exon
chr9:135739052-135739165
Length
50 bp
Sequences
Splice sites
3' ss Seq
CAAATCTTTTTATTCCACAGTGC
3' ss Score
8.68
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
AACATGCTGGAGCAACTCCTGATCCACCAGCCCGAAGATCCCATCCCCTTCATGATCCAGCACTTGCATAGAGACAACGACAATG
Seq A exon
TGCCCAGGATTGTAATATTAGGTCCACCCGCCTCAGGGAAAACAACAATA
Seq C2 exon
GCAATGTGGCTCTGCAAACATCTGAACAGCAGTCTCCTCACCCTGGAGAACCTGATCTTAAATGAGTTTTCCTATACGGCCACCGAAGCCAGAAGGCTTTATCTGCAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF132071=AAA_17=PU(15.9=82.4)
C2:
PF132071=AAA_17=FE(42.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAACTCCTGATCCACCAG
R:
ATCAGGTTCTCCAGGGTGAGG
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)