GgaEX7010604 @ galGal4
Exon Skipping
Gene
ENSGALG00000026836 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4922516-4922950:-
Coord C1 exon
chr23:4922915-4922950
Coord A exon
chr23:4922797-4922841
Coord C2 exon
chr23:4922516-4922704
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTCCTCTCTGTCTCCGCAGGGC
3' ss Score
13.84
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGGAACAGGGACCGGACGGACCCGCTGGTAAAGAG
Seq A exon
GGCCCCCCAGGAAAGCCTGGCACTGCAGGACCTGCTGGCCAGAAG
Seq C2 exon
GGTGAAGCCGGGTCCCCTGGAATGCGAGGGTACCCTGGGGAGAAGGGCCGTGCTGGCGCGCCTGGGGGGCCGGGGAAGAGTGGCTCCATGGGCCCCATAGGGCTGCGGGGTCCTGCAGGAGAGAGGGGTCCCCCCGGCTCACCAGGACCTGCGGGCAGCCCTGGGCTGCCAGGACCCCCCGGGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026836-'81-87,'81-86,82-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(93.9=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGGGACCGGACGGA
R:
CCCTATGGGGCCCATGGAG
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]