MmuEX6096368 @ mm9
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:129771758-129773778:+
Coord C1 exon
chr4:129771758-129771793
Coord A exon
chr4:129772787-129772831
Coord C2 exon
chr4:129773590-129773778
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATGTTGTTGTTTTTAATAGGGA
3' ss Score
9.1
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGTGAGCCTGGTTCGGACGGTGCAGCTGGCAAAGAG
Seq A exon
GGACCTCCTGGAAAGCAGGGACTCTATGGACCCCCTGGCCCAAAG
Seq C2 exon
GGTGACCCTGGACCTGCAGGACAGAAGGGCCAAGCAGGAGAAAAGGGAAGATCTGGCATGCCAGGGGGTCCTGGCAAGAGCGGCTCCATGGGACCTATCGGACCACCGGGGCCTGCAGGAGAGAGAGGTCACCCTGGGTCCCCAGGGCCTGCAGGGAACCCTGGATTGCCTGGTTTGCCGGGCTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690-'78-83,'78-82,79-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.4=100)
A:
PF0139113=Collagen=FE(17.1=100)
C2:
PF0139113=Collagen=PD(47.6=61.9),PF0139113=Collagen=PU(90.3=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGACGGTGCAGCTG
R:
GACCTCTCTCTCCTGCAGGC
Band lengths:
156-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: