HsaEX6029722 @ hg19
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32120915-32122669:-
Coord C1 exon
chr1:32122634-32122669
Coord A exon
chr1:32122001-32122045
Coord C2 exon
chr1:32120915-32121103
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGACTTTTGCTTTCCTCTAGGGA
3' ss Score
11.97
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGCGAACCTGGTACGGATGGTGCAGCTGGCAAAGAG
Seq A exon
GGACCCCCTGGAAAGCAGGGATTCTATGGACCTCCTGGTCCCAAG
Seq C2 exon
GGTGATCCAGGAGCTGCAGGACAGAAGGGCCAGGCAGGAGAGAAGGGGAGAGCCGGCATGCCTGGTGGACCTGGCAAGAGTGGTTCCATGGGGCCTGTTGGGCCACCGGGCCCTGCAGGAGAGAGAGGCCACCCTGGAGCTCCGGGGCCTTCGGGGAGCCCTGGCTTGCCTGGTGTGCCTGGCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'88-88,'88-86,90-88=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.3=100)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGTACGGATGGTGC
R:
CAACAGGCCCCATGGAACC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)