BtaEX6012333 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122607596-122609302:+
Coord C1 exon
chr2:122607596-122607631
Coord A exon
chr2:122608195-122608239
Coord C2 exon
chr2:122609114-122609302
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGACTTCTGCTTTCTTCTAGGGA
3' ss Score
11.1
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTGAACCCGGCATGGATGGCGCAGCTGGCAAAGAG
Seq A exon
GGACCCCCTGGAAAACAGGGACTCTATGGACCCCCAGGTCCAAAG
Seq C2 exon
GGTGACCCGGGGCCTTCAGGACAGAAGGGCCAGGCAGGAGAGAAGGGAAGAGCTGGCATGCCTGGCGGGCCCGGCAAGAGTGGCTCCATGGGACCTGCGGGGCCACCGGGTCCTGCAGGAGAGAGAGGCCACCCTGGATCTCCGGGGCCTGCGGGGAGCCCTGGATTGCCCGGGGTGCCCGGCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'87-90,'87-89,88-90=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCCGGCATGGATGG
R:
GGTCCCATGGAGCCACTCTT
Band lengths:
130-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]