HsaEX1045847 @ hg38
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr1:31655314-31657068:-
Coord C1 exon
chr1:31657033-31657068
Coord A exon
chr1:31656400-31656444
Coord C2 exon
chr1:31655314-31655502
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGACTTTTGCTTTCCTCTAGGGA
3' ss Score
11.97
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGCGAACCTGGTACGGATGGTGCAGCTGGCAAAGAG
Seq A exon
GGACCCCCTGGAAAGCAGGGATTCTATGGACCTCCTGGTCCCAAG
Seq C2 exon
GGTGATCCAGGAGCTGCAGGACAGAAGGGCCAGGCAGGAGAGAAGGGGAGAGCCGGCATGCCTGGTGGACCTGGCAAGAGTGGTTCCATGGGGCCTGTTGGGCCACCGGGCCCTGCAGGAGAGAGAGGCCACCCTGGAGCTCCGGGGCCTTCGGGGAGCCCTGGCTTGCCTGGTGTGCCTGGCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'107-113,'107-111,111-113
Average complexity
S
Mappability confidence:
92%=86=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.0=100)
A:
PF0139113=Collagen=FE(23.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGTACGGATGGTGC
R:
CAACAGGCCCCATGGAACC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains