RnoEX6023515 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148305604-148308003:+
Coord C1 exon
chr5:148305604-148305639
Coord A exon
chr5:148307015-148307059
Coord C2 exon
chr5:148307815-148308003
Length
45 bp
Sequences
Splice sites
3' ss Seq
AACTTCCGGTTCTTTTATAGGGA
3' ss Score
8.6
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGTGAACCTGGTTCGGATGGTGCAGCTGGCAAAGAG
Seq A exon
GGACCTCCAGGAAAGCAGGGACTCTATGGACCCCCCGGCCCAAAG
Seq C2 exon
GGTGACCCAGGACCTGCAGGACAGAAAGGCCAAGCAGGAGAAAAGGGAAGATCTGGCATGCCTGGGGGCCCTGGCAAGAGTGGCTCCATGGGACCGATTGGACCACCGGGTCCTGCGGGAGAGAGAGGCCACCCTGGGTCCCCAGGGCCTGCTGGGAACCCTGGATTGCCTGGTTTGCCAGGCTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475-'95-94,'95-92,99-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCTGGTTCGGATGGTG
R:
GTGGTCCAATCGGTCCCATG
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]