GgaEX7011926 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:435538-436475:+
Coord C1 exon
chrLGE22C19W28_E50C23:435538-435626
Coord A exon
chrLGE22C19W28_E50C23:436031-436109
Coord C2 exon
chrLGE22C19W28_E50C23:436325-436475
Length
79 bp
Sequences
Splice sites
3' ss Seq
GGCTGTCTGCTCTCTTCCAGACA
3' ss Score
9.31
5' ss Seq
TCAATATCC
5' ss Score
-14.34
Exon sequences
Seq C1 exon
GTACCTGGTGATGGCCGGGACGCCAGAGAAGATCCTGGAGCACCTGCTGGAGTTCATGAGGCTCGATGCCACGCTCTACGACCCCGTGG
Seq A exon
ACACACTCCTAGGGGATTTCCTGCTGACCTACACTGTGTTCATGCCGACCTCGCAGCTCTGCAGGGCTCTGCTGCATCA
Seq C2 exon
TTTCCGTGCGGAGCCGCTGGATGGCTCAGAGCAGGAGAAAGCCACCTACTGCCTGCACAAGCGCCGCAAGATCCTGCGCCTGGTGAGCCAGTGGGTGCTGCTCTATGGGAGGCTGCTGCAGGGCGACCGCAGCACCACGGCTCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'20-21,'20-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(25.5=90.3)
A:
PF0061815=RasGEF_N=FE(23.6=100)
C2:
PF0061815=RasGEF_N=FE(45.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCAGAGAAGATCCTGGA
R:
CTCCCATAGAGCAGCACCCA
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]