RnoEX6033810 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139244051-139244824:-
Coord C1 exon
chr7:139244736-139244824
Coord A exon
chr7:139244402-139244480
Coord C2 exon
chr7:139244051-139244210
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACCCTAACCCTGCCCAACAGAGA
3' ss Score
5.62
5' ss Seq
CCAATATCC
5' ss Score
-12.74
Exon sequences
Seq C1 exon
ATATACGGTAATGTCTGGCACCCCAGAGAAAATCCTAGAACTCCTGTTGGAGGCTATGAGACCGGATTCCAGTGCTCATGACCCAACAG
Seq A exon
AGACATTCCTCAGTGACTTCCTGCTGACGCACAGTGTCTTCATGCCCTGCACACAGCTCTTTGCCGCCCTCCTGCACCA
Seq C2 exon
CTTCCACGTGGAGCCATCAGAGCCTGCCGGGGGCAGCGAGCAGGAACGCAGCACCTACATCTGCAACAAGAGGCAGCAGATTCTGCGTCTGGTCAGCCGGTGGGTGGCCCTCTACAGCCCCATGCTCCGCTCAGATCCCGTGGCCACCAGCTTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'20-26,'20-24,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.235
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(24.8=90.3)
A:
PF0061815=RasGEF_N=FE(23.0=100)
C2:
PF0061815=RasGEF_N=FE(46.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACCCCAGAGAAAATCCT
R:
GCTGACCAGACGCAGAATCTG
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]