GgaINT0001713 @ galGal3
Intron Retention
Gene
ENSGALG00000013419 | PBX4
Description
NA
Coordinates
chrUn_random:30310589-30313353:-
Coord C1 exon
chrUn_random:30313187-30313353
Coord A exon
chrUn_random:30310663-30313186
Coord C2 exon
chrUn_random:30310589-30310662
Length
2524 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTTTTTTTGTTTTCCTGCAGGAA
3' ss Score
13.76
Exon sequences
Seq C1 exon
GTTGCTCTCCAGGGGGGTCTCCCTCCGGGGGGTCCCACTGCCCCCACCGCTACTCCGGGGGATCCGAGCGCTGTGCCCCCCCCGGGCCCTCCCCCCCACGATACGGGCGACGTTCTGCAGCAGATTATGGCCATCACCGATCAGAGCTTGGATGAGGCCCAGGCGAG
Seq A exon
GTAATGGGGGTCCCGCTCTGCCCTATAGCGGCGGCTGCGGGGCGGGGGGTGCTCTTAGGAAAAAAAATGAAAGAAAGAGTGCGTGCCATGTCAGGTGAAAGGCCATTTTAATCATTAAACGCCTGAAAAAGGAAGTGGTTTTAATAAAGCTTTATTTACTATAATCTGCTAAATAGCTACTGCTACTGGCTTTGAGCTAGTAGGACCGGCCCCATGTGATACAAAGCACCATTTGTTACGCTGGGTGAGGCAGAATAACGATTTGTGCTGTGCTGCTTTCCATTGTTGCTCTACAAGTGTGCATTAATCCCCAAAAGACTTTCTATCATCTTTGACTGAACGAGGGAAGGCGCGTCCGTGCGCCTGCCTGTGCAGGCTGCCAACAGCTGGCCATCAAGCGGGAGGGGCTGCGCTCATTATTGGGGGCTGGAGCCGGCTGGGCAGGCTACACGGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGTTCCCCGCTCTTGCCCCCTATAAGCCGGCGGCTCCGGACCGCGGTTTGGGGCTGTGGGAGATAGATAAATCGGGGGGGGTCTCACCCCTTTTTATCTGCGTGTACAGCGATGGGACCCCCTCGGTGGAGCCGCTGTGGGGATATGGGGCGGCTCGATGCCGGTTCGGTGCTCCTGCAGCCCCATGTCGTGGCTCTGCTGTGTTCTGTCGGGACTATCGCGATAGGCTGATGGGGAGATGGGGGCTGTGGGGCTCCACCTCTGCTCTGGGCCACGGCACAGCGATGGGAGTTTGGTTTGGGGATATGGGGGGGTTCGATGCCTGTTCTGTGTTCCTACAGCCCAATGCTGTGACTCAGCTGTGTTCTGTCGGGACTATCGCGATAGGATGGGGGTTACTCAGCTGTGTTCTATCGGGACTATCACAATAGGATGGGGGTTACGCAGCTGTGTTCTGTCGGGACTATCGCGATAGGATGGGGGTTACTCAGCTGTGCTCTATCGGGACTATCGCGATAGGATGGGGGTTACTCAGCTGTGCTCTATTGGAACTATCACGATAGGATGGGGGTTACGCAGCTGTGTTCTATGGGGACTATCGCGATAGGATGGAGGTTACTCAGCTGTGCTCTATCGGGACTATCGCGATAGGATGGGGGTTACTCAGCTGTGCTCTATCGGGACTATCGCGATAGGATGGGGGTTACTCAGCTGTGTTCTATTGGGACTATCGCGATAGGATGGGGGTTACTCAGCTGTGCTCTATCGGGACTATCACAATAGGATGGGGGTTACTCAGCTGTGTTCTATCAGGACTATCGCGATAGGATGGGGGTTACTCAGCTGCGCTCTATCGGGACTATCGCGATAGGATGGGGGTTACTCAGCTGTGCTCTATCGGGACTATCGCGATAGAGTGGCCCCATGGTGTGGCTCGGGGTATCCCATGGTTCCAACTGGCATCGCTTCTGTCTGTCCATCTGCCCTTCCTTCCGTCCTTCCCTCCTTCCTGTGTGTCCTGTATCGTTTCCAGCTGTGTTCCATATTGGTCCCAGCTTTGTCCCATGTAGTTGTTAACTGTGTTCCAGGTTGGCTCCAGCCGTGTCCTATATGGCTTCAGGCTGTGCCCTACACAGTTTCCAGCCGTGTTCCAGGTTGTTTCTGGCTGTGTTCCATATTGGTTCTAGCTGTGTTCTGTATTGAATCCAGCCGTGTCCTATATGGTCTTGGTCTGTGTCCTACGTAGTTTCGAGCTGTGTTCCAGATTGGTTCCAGCTCTGTCCTGTGTTGATTCCAGCCGTGTTCCAGGTTGGTTTCATGCTGTATCCTTCACAGTTTCCAGCTGTGTTCCACGTTGGCTCTGGCTGTGTCCTACACGGTCTTGGTTTGCGTCCTATATTGATTCCAGCTGTGTCCCATATAGCTTCCAGCTGTGTTCCAGGTTGGTTCCAGCTGCGTTCCATGTTGGCCCTGACTGTGTCCTACGTGGTCTTGGTCTGTGTCCTGTATTGATTCCAGCTGTGTTCCAGGTTGCTTTCATGCCGTGTCCTTTATAGTTTCCAGCTGTGTTCCATATTGGTTCCAGCTGCGCCCTGAGCAGTTTCTGGCCGTGTTCTGAGCTGTGTTCTGGGTTATTCCTCCCCTTTTGGTTTTCCCTACAGCAAAACTGACTGTTTTTTTTCCCCCTTTTTGTACACAATTTCTGCTTTTTTTTTTTTGTTTTCCTGCAG
Seq C2 exon
GAAACACGCCCTGAACTGCCACAGGATGAAGCCTGCTCTGTTCAGTGTGCTCTGTGAGATCAAGGAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013419:ENSGALT00000021886:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(13.8=49.1)
A:
NA
C2:
PF037928=PBC=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]