GgaINT0015068 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7639774-7640531:-
Coord C1 exon
chr14:7640325-7640531
Coord A exon
chr14:7639912-7640324
Coord C2 exon
chr14:7639774-7639911
Length
413 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
ATTTCTTTTTCCCTTTGAAGGAC
3' ss Score
10.63
Exon sequences
Seq C1 exon
CTTTGTGAAGAGAAGAACCTCCTCCAGGAGAAACTTCAGGCAGAAACTGAACTGTATGCTGAAGCTGAAGAGATGAGAGTCCGTTTAGCTGCGAAAAAGCAAGAGCTGGAAGAGATTCTGCATGAGATGGAGGCCAGAATTGAGGAAGAGGAGGAACGCAGCCAACAGTTGCAGGCAGAAAAGAAAAAGATGCAACAACAAATGCTG
Seq A exon
GTAAGGAAGCATAAGCAAGAAATAGACATGCTAACTTGTATCTCAGAGAACAGCAGGAGATAGGACCTGAGGTTTGCCAATGAAAGACCTTGCTATGCAGCCCTTAGTAGAATGTGTTTATGCCACTGAAGTAGTAACAAACAGATCTATGCTCTTTCCTCCAGAATTCTTTATACATCATCTTCCCCTACCCCAATTTTAAATTATTTTCTGTTAAAAAAAAACAAACAAAAAAAAAACCTGTTTCAGTAAATCTTCCTTTCTAAGTCAGCAAGTATTACATATAGTCTACTTCTTAGTAAAAGCAACCAAGTTTATAACATACCCCACATAGACTGACAAACATTATGCATTTCCTGTTATTTAAATTGTATTTTATTTCCAGAATTCATAATTTCTTTTTCCCTTTGAAG
Seq C2 exon
GACCTGGAGGAACAGCTGGAAGAAGAAGAAGCTGCGAGGCAGAAACTGCAACTTGAAAAAGTTACAGCAGATGGCAAGATAAAGAAAATGGAAGATGATATTCTTATCATGGAAGATCAGAATAACAAGCTAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGAAGAGAAGAACCTCCTCC
R:
TGTTAGCTTGTTATTCTGATCTTCCA
Band lengths:
342-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]