MmuINT0103268 @ mm9
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14218933-14220159:-
Coord C1 exon
chr16:14219953-14220159
Coord A exon
chr16:14219071-14219952
Coord C2 exon
chr16:14218933-14219070
Length
882 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGA
5' ss Score
5.2
3' ss Seq
CTGTCTGTCCCCCAACAAAGGAC
3' ss Score
6.15
Exon sequences
Seq C1 exon
CTGGCTGAGGAGAAGACTCTGCTGCAGGAGCAGTTGCAGGCAGAGACAGAGCTGTATGCTGAGGCTGAGGAGATGCGGGTCCGGTTGGCAGCCAAGAAGCAGGAACTGGAGGAGATCCTACATGAGATGGAGGCCCGCCTGGAGGAAGAGGAAGACCGGGGCCAGCAACTACAGGCTGAGAGGAAGAAGATGGCTCAGCAGATGCTA
Seq A exon
GTAAGACATTGCAGGGGCAGCTCGTGGCCGGAATAGGTTCACTAGATCCTCAGTGAAGGCATCTGATGATGCTGGAAGATGGAGGGACTGAGGTTTAGAGAACAATCTGTCCCAACCACAGAACTAAGGCAAGGACTGAATATAAGTCTCCAGAGCCTGCTCTGTCTGATGTCTTGTCTTCTGTGTGCTGACCCCCTTCCTGTTAGCAATTTGGTGTTAAAGGATAATTGTGTCACCTATTACTCTGTAACAAAACAGCTTGAATATAGCAGCTTCAAATAATCCATATTTATCTTAGTATTCAGCAACTGGGGAGGGGCTTAATTGAGTAATTCTGGCTATGATCACTCATAAGGTTAGCAAATCAAGGCTCCAGTCAGGGCCAGTCATTTGAAGGCTCGATCAGGCTAGAAGATCTTTGTGCCTTATTCATATGACTGTTAGCAGGAGGTGCCAGTTCCTCGGCCACTTAATGTGGCTGCTTGGGCTTCCTCTCATCATGGCTATAGACGGTCCCTAGAAGGAGGAAGAGGAAACCATGATTACTTTCATAGCTCAGACCTCTGGGGTCACAATCTATTAGTTCCTTCCGATAGTGTTGAAAATTCCTAACCCCCACATACTCAAGGGGCCTAGTTACCTGCCTGCCTCTGGAAGAAGTGCACATTAGAGAGTGTCCAGAGTATGGTGCCCACTCCCAGTAACAGAACACTGATACGGAGCGAGGCAGAGTAGCCTCCGTGGGCTTCCATCTCCTCATTTCTTAAGGAGACAGCAAAGAACAGGGTGTATTCATCCCAGCTTCCATGCTGGCTAGCTCTAGATCTCCACTAGTGACTTCGTTCCAGCAAAGCTGTGATCCCTGTCTGTCCCCCAACAAAG
Seq C2 exon
GACCTGGAGGAGCAACTGGAGGAGGAAGAGGCCGCCAGACAGAAACTACAGCTAGAGAAGGTCACGGCTGAGGCCAAGATCAAGAAACTGGAGGATGACATCTTGGTTATGGATGATCAGAACAGTAAACTTTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-Myh11:NM_013607:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.457
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(9.5=20.3)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(30.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGAGGAGAAGACTCTG
R:
TGAAAGTTTACTGTTCTGATCATCCA
Band lengths:
342-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: