GgaINT0015068 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7573265-7574019:-
Coord C1 exon
chr14:7573813-7574019
Coord A exon
chr14:7573403-7573812
Coord C2 exon
chr14:7573265-7573402
Length
410 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
ATTTCTTTTTCCCTTTGAAGGAC
3' ss Score
10.63
Exon sequences
Seq C1 exon
CTTTGTGAAGAGAAGAACCTCCTCCAGGAGAAACTTCAGGCAGAAACTGAACTGTATGCTGAAGCTGAAGAGATGAGAGTCCGTTTAGCTGCGAAAAAGCAAGAGCTGGAAGAGATTCTGCATGAGATGGAGGCCAGAATTGAGGAAGAGGAGGAACGCAGCCAACAGTTGCAGGCAGAAAAGAAAAAGATGCAACAACAAATGCTG
Seq A exon
GTAAGGAAGCATAAGCAAGAAATAGACATGCTAACTTGTATCTCAGAGAACAGCAGGAGATAGGACCTGAGGTTTGCCAATGAAAGACCTTGCTATGCAGCCCTTAGTAGAATGTGTTTATGCCACTGAAGTAGTAACAAACAGATCTATGCTCTTTCCTCCAGAATTCTTTATACATCATCTTCCCCTACCCCAATTTTAAATTATTTTCTGTTAAAAAAAAAAACAAAAAAAAACCTGTTTCAGTAAATCTTCCTTTCTAAGTCAGCAAGTATTACATATAGTCTACTTCTTAGTAAAAGCAACCAAGTTTATAACATACCCCACATAGACTGACAAACATTATGCATTTCCTGTTATTTAAATTGTATTTTATTTCCAGAATTCATAATTTCTTTTTCCCTTTGAAG
Seq C2 exon
GACCTGGAGGAACAGCTGGAAGAAGAAGAAGCTGCGAGGCAGAAACTGCAACTTGAAAAAGTTACAGCAGATGGCAAGATAAAGAAAATGGAAGATGATATTCTTATCATGGAAGATCAGAATAACAAGCTAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGAAGAGAAGAACCTCCTCC
R:
TGTTAGCTTGTTATTCTGATCTTCCA
Band lengths:
342-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]