RnoINT0096356 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:833281-834524:+
Coord C1 exon
chr10:833281-833487
Coord A exon
chr10:833488-834386
Coord C2 exon
chr10:834387-834524
Length
899 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CTGTCTATCCCCCAATAAAGGAC
3' ss Score
5.48
Exon sequences
Seq C1 exon
CTGGCTGAGGAGAAGACCCTGCTGCAGGAGCAGTTGCAGGCAGAGACAGAGCTGTATGCTGAGGCTGAAGAGATGCGGGTCCGCTTGGCAGCGAAGAAGCAGGAGCTAGAGGAGATCCTCCATGAGATGGAGGCCCGCTTGGAGGAGGAGGAGGACCGGAGCCAACAACTGCAGGCTGAGAGGAAGAAGATGGCTCAGCAGATGCTG
Seq A exon
GTAAGACATGGCAGGGGCAGCCTGTGGCAGGAATAGACTCACTAGATCCTCAGTGAAGGCATCTGATGATAAAAACATGGCCATGATGCTGGGAGATGAAGGAACTAAGCCTTAGAGAGCAATCCGTCCCATACCATAGAACTAAGAACTGAATATAAGTCTCCAGAATCTGCTGTTTACTGTCTTGTCTTCTGTATGCTGACCCCCTTCCTGTTAGCAATTTGGTGTAAAGGATAGTTGTGTCAGCTATTACACTGTAACAAAACAACTTGAATATAGCAGCTTCAAATAATCCGCATTTATCTTAGTATTCAGCAACTAGGGAGGGGCTTAGTTGAGTGGTTCTGGCCATGGCCGCTTATAAGGTTGGCAATCAAGATTCCAGCCAGGGCCAGTTATTTGAAGGCTCAATCAGGGTAGGAGATCTTTTATGCCTTATTCACATGACTGTTAGTTAGCAGGAGGTACCAGTTCCTTAGCCACTTAATATGGCTGCTTGGGCTTCCTCTCATCATGGCTGTGGACTGCCCCCAGAAGGAAGAAGGGGGAAGCGATGATGCCTTTCAGAGCCCAGGCCTCTGAGGTTACAGTCTATTACTTCCTTCTAATTGTGTTGAAAATTCTTAACCCCCATACACTCAAGGGGACTAATTCCCTGCCTCTGGAAAAAATCAGCGTCAAAGAACATCTGGAGTATGGTACTCATTCCCTGGTAAGCTCAGGACACTGATACAGAGTAAGGCAAAGGAGCCTCCATGGGCTGCCATCTCCTCCTTTCTTAAGGAGACAATAAAGAGCGGGGTGTGTGCTCATCCTAGCCTACACACCGGCTAGCCCCAGATCTCCACTAGTGACGTCATCCCGGCAAAGCTGTGATCCCTGTCTATCCCCCAATAAAG
Seq C2 exon
GACCTGGAGGAGCAACTGGAGGAGGAAGAAGCTGCCAGACAGAAACTACAGCTAGAGAAGGTCACAGCTGAGGCCAAGATCAAGAAACTGGAGGATGACATCTTGGTTATGGATGACCAGAACAATAAGCTTTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.457
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(10.1=21.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(30.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGAGGAGAAGACCCTG
R:
TGGAAAGCTTATTGTTCTGGTCA
Band lengths:
343-1242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]