GgaINT0016195 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:2263447-2264235:-
Coord C1 exon
chr14:2264078-2264235
Coord A exon
chr14:2263615-2264077
Coord C2 exon
chr14:2263447-2263614
Length
463 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTCTTTTTTTTTTTTTTTAGCTA
3' ss Score
10.36
Exon sequences
Seq C1 exon
GTGGGCCATTCCGACTTCGGCTTTTGAATGCGGCCCCCACCAACATCACCTTTGCCATGCTCTTTGGGAGAAGGTTTGACTACGGAGACCCAACGTTTGTCACTCTGCTACGACTCATCGATGAAGTTATGCTCCTTCTTGGCTCCCCATTCCTGCAC
Seq A exon
GTAAGTCACCCCCCCGTGCTGAGTGTAATTGATGTATAATTCATGTGAAAGTTAAAAATGATGCTCTAACAGCTTCAAAACATACATATTTTGGCTTGCTGAACATTTGGAGTTTTCTTTGCTAGAGCGTCATGCTTTATCTTTTTGCTTTATTACCTCTTTAAAAATGTAATTTCATTGTTTCATGAGTTCACTATCACTTTCCCTTAATTGTGTTCTTTTAATTCATGTTTATAGGCTGTGTCTAGACAAGTCTGATAGCTCCCATTCATTTCTGTAAAGAACTTTTAGTGGGAGGCATTTTTATACACTGCATTTTTTTAGTTGGCCAGAAAGAGAGACTCTCATACCGTGTCGTTTGGTTCCTCACCCAACTGATTTCTCCAGTTTGATCCTTAGGTTTTGCAGTCTTTTACAGAACTTTTTTTTTTTTCTGTGTTTTTTTCTTTTTTTTTTTTTTTAG
Seq C2 exon
CTATTTAATTTCTACCCATTTCTTGGATTTCTTCTTAAACCTCACAAGATGATACTGAAAAAAGTAGAAGAGGTGTGTGTGATCCTAAGGAAACGTATCCAGGAAAGCAAAGCAAATATTAGTGAAAACAACCTGACGAGCTACATTGATGCGCTGGTCTTCAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050:ENSGALT00000006446:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(20.5=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCCATTCCGACTTCG
R:
TTGTTTGAAGACCAGCGCATC
Band lengths:
326-789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]