MmuINT1008045 @ mm10
Intron Retention
Gene
ENSMUSG00000040583 | Cyp2b13
Description
cytochrome P450, family 2, subfamily b, polypeptide 13 [Source:MGI Symbol;Acc:MGI:88599]
Coordinates
chr7:26081649-26086029:+
Coord C1 exon
chr7:26081649-26081809
Coord A exon
chr7:26081810-26085852
Coord C2 exon
chr7:26085853-26086029
Length
4043 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGGGCCCTTCTTTCTTGTAGATG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GAGCCCCCCTGGATCCAACCTTTTTCTTCCAGTGTGTTACAGCCAATATCATCTGCTCCATTGTCTTTGGAGAGCGCTTTGACTACACAGATGAACAGTTCCTGCGTTTGCTGAATCTGATGTATCAGATATATTCACTCTTAAGGTCATTCTCCTGCCAG
Seq A exon
GTCAGTGCTTGGGAAGAGAGGAGCATCCAGGGCAGAGTTAAGAAGAAGCTGATTTGTGGGTGAAAGAGGGAGTGTTTTAGGCTTGGAACAAAGGCATAGACATCATGGAGCGACAAGGAGGCTGCAACCTGAGGCAGGGTGGGAGTGATGGTGAGCAAGATGGAGAGACCTGAATGTGGAAATACAGAGTCATACACATACATATGCAGTCAGTGATAAAGTGGGTGGTGTGGGTATAGCCAGACAGTGGAAGACTTGGTTTTCATGCATGAATCCTGCCTCCTTATATCCTGGGTAAGGTAGTATATGACATGGGCAATTCCAGCACATGGAGGTAGGGAGATGAGAAATTCAGAGTGATCCTTGGCAAGTCTTGCTTACATGAGACCCTGTGCACATAAACCAAAAAACCAGAAATTAGAACAAACAAAGACAATTAAGTAAAGCAAAATGTGAGAGATAGCAGAGGAATGGAAATGGGAGATACAGAGAATGAAAGACAAAGGTTAGAGATAGATTAAGAAGTTCAAAAGCATACATGTGTATAATGTACATATATGATGTATGTGTGTGTGTGTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGAGCTTTGTGTGTTTTTTATCAAATTTGTGGGCCTAGTGTTAGGGATGGTGGTTCCTTGGAGTTAATAGAGGACACACTCGGACCCCAAGCTCTTGGCACAAATGAGATTTATCCCCCTGGAGAAACAAGTAGGAGGTGAGGCTTCCAAGGCAAAAAAGCAGTAGCAAAGAGGCGTTTTTGCAGGTTGGTTTTCTTAAGAGAAAAGTTGGAGTCTGTCTAGAGTGAGTTCTGAAATCCTGACTGAATGTTACTCAAATAATGAATATTGATTGTTGGACCTTGGTGTTTTGGGTCAGGAATGAGTCAGTGGCCAAATGAGGGCATGGACCTTGTAAACTGGTTGTACAAATACAATCTAATGGTTTAGCAAGCGGAGAAGGGTCAAAGACAAATCTTACTGATACAATGTCTGCTATGTTTGCCATCCTCAGGCCTGACAGAGCCCATCATTCTCATCTCTTTCCTTCCTTCCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCCCTTCCTCCCTCCCTCCCTCCCCCTCTCTCTTTCTTTCCTTTCTTCCTTTCTTTTTTCCTTCCTTTCCTTTTTATTTTTAAATTTTATTTTACTTTTTTTATTAGATATTTTCTTCATTTACATTCAAATGCTATCTCCTTTCCTAGTTTTCCCTTTGAAAATCCCCTATCTCCTCCCCCTCCCCATGCCCCCCATCCCACCCACTCCTATCCCTGGTCCTGGCATTACCCTATAGTGGGGCATAGAGCCTTCACAGGACTAAGGGCCTCTCCTCCCATTGATGACCAACTAGGCCATCCTCTGCTACATATATAGCTAGAGCCACGAGTTCCACCATGTGTTTTCTTTGATTGGTGGTATAGTTCCAAGGAGCTCTGGGGGTACTGGTTAGTTCATATTGATGCTCCTCCTGTGGGGCTTTGTTACTTTGTTACTTATTCACTTTACATCCCATTCACTGTATGCCCTTCCTGGTTATCCCCTTCCATGATCCTTCTTCCATCCACCTCTCCCCTTCTTTTCTGAGTGGTGGGCCTCCTGGGTTTCTCTCCACCTTGGCATTTCAAGTCTCTGTGAGGTTAGGCACATCCTCTCCCACTGAGGTTGGAGAAGGGTTCCCAGCTAGAGCAACATATCTCACATACAGGCTGCAGGTTATAGGATAGCCCTGTACAAGTGGCTTAGGAACCACATGAACACCAACCTGCAAATCTGTTACATGTGAGCATGGAGGCCTAGATCCAACCTGTGTAAGTTCTTTGTCTGGTGATTCAGTCTCTGAGAGTCCTAAGGACTCTGTTAGCCTTCCTGTGGCATTCCTAGCCCCCCTTTGGTCCCTGTAATCCTTCCTTCTGTTGTTCCATAAAATCTTCAAGCTCCATCCACTGTTAGGCTGTGGGTGTCTGTATCTGTCTGAGTCAGCTGCTGGGTAGAACCTCTCAGAGGGCAACCTGTCTGCAAGCATAGCAAAATACCGTTAATAGTGTTAGGAATTGGTGCTTGCCCACTGGGTGGGTCTCAATTTGGGCTGGTTATTGGTTGGCCATTCCCTTTCATTCTCCTCCATCCCCAATGTGTGTTTGCACTACTTGTAGACAGGATAAATTTTGGGTCTAAAGTTTTGTGGGTGGGTTGTTGTATCTCTTGTTCCACTGGGGTTTCTGTCTGGCTACAGGGGTTGGGTCCTTCAGGTTCCATATCTCCAGTGTAGTGAGTAACAGCTAAGTTCACCCCCATTGATTTTTGGGTGCCTCCCTTATCCCAGGTCTCATCCTGGAGATTCCTCCCTCCACCACCTCCTCACTTCCATCATTTAGATTTCCATTCATTTTCATCTAGCCATCTCCTGTCCTTTCCCACATCTGATCCTGAATCCCTCACTCCCTTCTCCATCCTCCCTCCCTCCCAGTTCCCCCCTCCATCTGCCTCTTATGACTATTTTTATTCTCCCTTTTAAGTGAGATTCAAGCTTCCTCACTTGGGCCTTCCTTCTTTTTAGTTTCTTTGAGTCTGTGGACTGTAATACCTAGGGTACCTGTATTTTATGACTAATATCCACTTATAAGTGAGCACATATTACCCATATTCTTTTGAGAATGTGTTACCCCAACCATGATTATATTCTGAGGTTCTATCCACTTGCCTGCAAAATCCATGATGTCTTGATTTTTCATAGTTGAATAAGTATTCCACTGTGTAGATGTCCTGCATTTTCTTTATCCATTCTTCAGTTGTGGACATCTAGGTTGATTTCAGTTTCTGGCTATCATGAATAAAGCTTCATGAACATGGTTGAGCAAGTGCCTTTGTGGGATGTTTATACATATTTTGGATGTATACCCAGAAGTGGTATAGCTGGTTCTTGAGGTAGAATTACTCCAAGTCTTCTAAGAAATCACCAAATTTGTTTTTCAAAGTGGTTGTACAAATTTACATTCCTACCAGCAATGAAGTAGTATTGGCTCCACAACATCCCCAGCATGTGCTATCACTTGAGTTTTTTTATTTTAGTCATTCTGACAGGTGTGAGATGGAAACTCAGATTTGTTTTGATTTGCATTTCCCTGATGACTAAGAACTTTGAACATTTTTCTAATTGCTTCTCAGACATTCAAATTCCTATGCATGTTAGGTAAGTGGGTGTCGTTCTCTCTGGGTACTTCCTGCTGACACTGGTTCATCGTTGTTAGGGACCCAAAGAAAAGAGAATGTTGGTCAATATTAGGAAGAACAGTCTGTTTATTTATTATTAAGGTTCTGCTAGAATATCTGGGGTTATGGAAGTACTGTCTGTGAGGCTGGACCAGGAAGAAGATTCCAAGGAAAATCCTGGATTGGTCTGTGAATGGGTTTCAAGTTGTTGGGACAGCTAGACTAGGAATAGAAGTAAAGTTGAGGAGGTTTGGGATTGAAGAAAGAATTTTGGATGTACATTCGAATCTTTTAAGTCTTTTAAGTCCTGTGCTTAAGAAATGGGAGTCCTGATTTAAGGAAAAAGGGAGAGGAGATTTTACTCTGAGGAATAGACAGGTGTGTCCTTGTTGGAGGAAGTGTGTTGTTGGGGTGTTTTTTGAGGTTTCGGAAGCCCATGTAAGGCCCAGTGTTCTCCATTGTTCTTCCTGCCTGCCTGTGTATCAGGATGTAAGCCTTAAGCTCCATGTCTACATGGGTGATTCCTACTATAATGTTAATGAAATAACGTGAAACCATAGGTAAACTCTCAATTAAATCTCTCTTTTGTAAGAGTTGCCTTGGTCATGGTGTCTCCCAACATATTAAATCAGTGACTAAGATAGAACACTGTCGACTTTTTGGAACCTGATAGCTCCAGGTGACCTCCTGGGCCCTTCTTTCTTGTAG
Seq C2 exon
ATGTTTGAGCTCTTCTCTGGTCTCTTGAAGTACTTTCCTGGTGTACACAGACAAATTGCTAAAAACCAGCAGGAAATCCTCAACTTCATTACCCATCGTGTGGAAAAGCACAGGGCAACCTTGGACCCCAGTGAGCCACGAGACTTCATCGATACCTATCTGCTGAGGATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040583:ENSMUST00000005669:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types