GgaINT0021979 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19120445-19123509:+
Coord C1 exon
chr12:19120445-19120495
Coord A exon
chr12:19120496-19123376
Coord C2 exon
chr12:19123377-19123509
Length
2881 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
CTTGTCCTCTCTGAATCAAGGGC
3' ss Score
5.43
Exon sequences
Seq C1 exon
CAGGAGCTTGATCAAAGTCTACCACAGAGGCAACTGGAGGATCATAGAAGG
Seq A exon
GTATGTACAGCAGTCAAGCGTGTTCAGAACTAATCCTCTACCTTTTCCTTGCAAACAATGAAGTAATGTAAGATGCTTCTGTGGTTATCTGCTTGTCGTCAGCCTGTTAGAAGTTAGCGAGGCTAGCAGCAGTGTTTACAGAACGGGGCATCTGGGCAGCTCCTGCTGTATTCCTTGGAAGGGCGAGGCTTGGCTGCTTGGGATTCAGCCTCGGATCCCGCTCTGCTCTGGTCACACTTACAGCACCCCAGTGGTGATGAGCACACAGTTACAGTGACATTATCCATGCCAATGGAGTTTGCTCGTTTGGCCCCACCTGCCCCTTCATAAAGAATGAGGCTGCCAAGTTGACATCGTTAATACTTATATTAATTTCTTCTACTTTCTGCTTGGAGCAGCAACTGATAACTGCTTCACTCTTAAATTGTGTTAAAGGTATACTGTTTTAAAAATCATTACGGGTTTTTGATAGCACCCAATCTGTGCACTGCATCTGTTTTACTGACGTGTGTTTAACCATGTTTGTATGCTGCTTACCGTTAGTGTACCTTGAAGATAAATGCAGATAAAACTGAATGCTGCTGGATCTCCCTAAGCAGCATATTTTGGTTTTCCTCACTGCCACCAAAAGTCTGATGTTTGCATATTGCACACATCGAAGTGCTGTATAACAGCAACATAATGGCTAGGAAGGAAAGCCTGGAGGCAGTCCTAGGAGCTGGAGTTACCCCCTGCACTCAGGATGTGGGGAGCTCACTGAGCAGCACTTCTTGTAGTCACATGTGTGCTCTGATCTTCATACTATTACTACAAAGCAGTAGTCTCTGTAGAATTATTGCAAAGGAGCAGAAACTGCTGCTTTTAAATGCCAGGTGCTGAGACAGCGCTAGTCAGCTTAACAGAAAAGGCAATGGGAGAGCTGTGCTGCAGCCTGGGCTTGGCACGGGGCTCTGTGAGTATCAGGTTTCCTTTCTAATCAGTACCTGTGCGGAAGGAAGATGTAGGTGAGGATTTTTTGCCCGTCTTGGCCTTGTTCTGTCACATATCCTTCCTGACCTGCCAGACTGAGACAGAGGGAGTGGGTAAAGCACTCCGTCATGTGCTAAATGCTGTCATGTTACAATCAGTCACTTGCTCCTCGGGGATAAGTTTGCTTGAGCTTTGAGCTAGTCTCCTGCCTCTGCTACGTGGTCACAATTTGGCCCAAGCAGTGATAGGAAGTGTACGCCCCTTGGAAAAGCTCTATTTTCTTCTTTTACTTCCAAAAGAACCTATTTTTTTAATTGATTTTTTTTTAACGTTTGGAAGCAGCTGGTTGGAAAGCTCTCCTGGAGTTTTGCTGACGTCTCATCTCCTTGCCATTTCCTCCATCCCCATCTGATTCCATAAAATGCAGCTCCTGTGCTGCTGCTCTCACAGTGATGGGTGGTAGGAGCAGCTCTGCTCTGTGAGCAGCAGGGAGCAGCAATCCCAGCCGGCTGCGGGGACGTGTGGGGTCTGTTGGCCTGGGAGTGACACGTTTGAGGGTTGCTAGATCACGTCCCAGCAGGCTTTTGTCTTTACAGTGCACTGAGTACAAGGCTTTACCTAAGTGACGTTTTGGGTGTGCTAATTCCGTATCAAAAGCAGTCCAGCTGTGGCAGTGCTGGGTCTGTATGACTTAGCTAATGCACACCTAAGCTGTGTGCTTAGAACACATCTACTTGTGTTTGAAGGGCCTCTAGTGAGAGCTGGAAAAGCAGGGCTTCAATTGCATGATAGCTAATACTCAGCCCTCTATTGGACAACGCTTTGAATTTATATCCAGACAACTAATTTAATTTGAAACACAACTGAAAGTGAAATCGAACATGTTTTGCAAATGGAAGTGAAGATACTGTAGCTTATCCTGACAGATGTTTGAATTGAAATGATTGGTGGCTAGTTCTGATCTTCGGGGCTCCCCAGAAAGTCCCTTTGTCCCCTCTGTGTCGCTGGCACTGCTGCAGGCACAGCACGCGTCCAGCAGCAGAGTAGCAGCTTGCTGTTAAATAATCGCCTGCCTTCCTTCATGCACAAAGGCCTTACATAAGTCTGTTAACCCAACTACAGGGTTTCTGTATCTGCCTCTTGCCGGCAGTACAGCCAGCTTTTGTAAAGCCCTCTCAATTACTGGGGACTCTTGCAAAGGCTGAAATGAGCACAGAGCGAGCTCCGTGGGCTAACATTCGACCTGGGAGGTGCTTTGCTCTCCCTTGAGTTGTGCTGCTGACAGCACTGTGCTTTGTGCAGACATCCCCGGGATGTCAGGGTCACCCGAGGACCGGTGCCCCGTGGTGCTGTGCTCATGTGCTTGGCTGCTGACTGCCGGCTGAGCGGCCCAGCGGCACTGCGGAGGAAGGGCTGTGCCTGCAGCAGGGCTGGTGGCCCAGCAGTGACCAACACCAGAACCACAGGAGGGGATGGGGCTGGGGATGTAGGGTCTCAGAGCCCCTTCTGATGTTAGTTTTTCTCTAGTCCTCCTCTTTGTTTTATGCTGGTGCTGTCTGCGTCCCACTTGCTGATATTTAAACCTGAGACAATAGTTTTTAATTAGAAAAAGAAAAAAAAAATAGAACAAAAAAAGGCTTTTAGAGAATGAAATCTGACCAGAAAGCTTTAGGATGAAACCTGCACTGCAGCTGTTTGCAGTGTGAGGACCCCACAGTCTTATTTTGAGACAAATGTGGTGTCCCAGACTGCCGGGAGGTGTTGGGTAAATCCCTCCAAATCTCCGGGATCTCCATTCCCCTCCACTGCTGCACGCAGACCAGTGGTAGCAGCTGTGCTTTTGCTGTGGTTATTACTCATTCACTTGTTCCTTAACCTCAAGTGATGCTCTCCTTGTCCTCTCTGAATCAAG
Seq C2 exon
GGCGAGGCGCTCCGGCAAGTTTTGGTCAACCGTTACTATGGCAACGTCAGGCCTGCGGGACGGAGGGAGAGCCTCACCAGCTTCGGCAACGGGCCTCTGTCTGCTGGCAGCACCGGCAAGGCTGGGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]