RnoINT0076657 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140464544-140470306:+
Coord C1 exon
chr4:140464544-140464591
Coord A exon
chr4:140464592-140470173
Coord C2 exon
chr4:140470174-140470306
Length
5582 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
CATTATCCTATTCGAATTAGGGT
3' ss Score
6.1
Exon sequences
Seq C1 exon
GAGCTTGAACCAAGTCCACCCCTGAGGCAACTGGAAGACCATAAAAGG
Seq A exon
GTATGTAGCCTTGAGTCTCTCGGGTTGGGAGCTAATGACTGTAACTGCCCCCCCAACCCCAGCCACACAACTATGATTTAAAGACAGCTTCTGTTAGTATTGATATTGTCCAAACATGAATTGGCTTAGGACCAATTCATAGAGGTGAAACTAACTGGCAGCTCTGTTATCTACCTGAACAGAACTCTGCACAACCAAGCTGCCAACAGTAACCAAGTGAGTACTTCACACTCCTTCCCTGAGTCGCTTCTCTGAATAGGTGATGGGAGACTTTGTGCTTCTGTAGTGACTAGTTACACCGCCCAGCTGTGAGAAAGCTAACTTCCTCGTTTTCCCTTCAGCCAGTTTTTTACATGTGTGAGTGTGTGTCCCAGCAGACACATGCAGCTTCTCATCATTGGCTTGTTAGTAGGTGCACAGCCCTCATAGTTGGCTATTGTTATTTAATGTTACACCTCAGCCTTTGGTGGGCAAGGGTAAGTAAGTCTGTGAACACTAGCAGCTACGTAAAGCGCCCCCAGATCAGGAAGGGGTTTGTAGTTTTTCATCCTTGGAGAAGGAACAGAATAAATGTATGTTTGCATAGATTCTTAGAAAAAGAATGCTGCCTAGGACAAAGAATTGATACTTTTTTTTTATAATGCTGGCTGTGTGTTGTCAAATTTTCTAGAATATCATACGTACACGCACACACACATATGCATGAACTTGCTGACCAGCATTGGTTTTTCACATTATCACTTCTGGAAGATAGCTAGGCATCTCGGTTTTCCGAGAAATTACTCAGTATTATGTAAGACTTATATATATGCCCATGTATCAGTCTTAAACAATGTGTATGCTCTCCCAGTGGCAAGGCCTTTACCCCCATGTCACAGGTTAGGAAAGTTGAATGTCAGAGGTTTAACATATTGCTCAAGGTCACTCGGTTAGAAAATAAGCAGTCTTTGTAAAGACTGCCATGGGGTTCTGGTCATTTGTGTCATGGAGAGTTTATTTTTTGAGATAAACAGGTGAGGAACCTATGCCCTGTTCATATCCCCAACCCCAGCCCTTCACTTCCCCAGTCCCATCCTGCCCCACCCTGCCCCTCTGTCTCTCAGATTTCGTTCTGTTTTCCTGCCTTGACAGAGAATTAAGTTCTGTGATTTCTCCAGCTAAGGAATAGTTTCTAGGAAGTTTCCGTTTAGACCAAATGTAGAGCAGGATGCCCCTATAACAGGCTGTAACCCTGCAGCTCACCGACTAGGGGCACGTTACACTCATATCCTTTCCTCTTTTTAATTAATTAATTAATTAATTAATTTCCCAACTAGTGAAGAATTATCCTAGATCTTAGAAGTAACCAGCAAAGGTACCCAGTCATCCTTCATGCCCTGAGCTTCTTGAGGGACTCAACATCAAACAACAACAACAAGTCTTTGGTATTAGAAGCAGATACAGTTCTCCTTTGCTAGCTATTAGCTGCCTAATTTGTATATTATTTCATGTCTCTTTGCCTTCGTTTCTTCCACTATACAATGATACTGGTCTCTAACCCTTCGTACCGTAACTCTGAGCCCTGTACATACAGTGCTAAGCCCAGTGGCTGAAGTGTTTGAGAGGTTCACATTGTAGTTAGTTACCTTGCAGTTTGAAATGCTCGAGTGATTTTGTAGACAGCAAAGTTAAAAAACTCTGTGTGTGTGTGTGTGTGGTAGGATGAGTGATGTGTGGTGTGTGTGGGGTGTGTGTGGGTGTGGCGGGGGGTGTGTTGGTTTATTCTTTGTTTGTTTTAATTCAGGTGGTGGTGTAAGTACTAAGACACGAGAGACTCAGAGTCTGAGAGGTGATCTTGCCTCAAGCATGAGTTCTTTTAGTGGCTGGAACCGGGAACCCGAAGGCTACCTCCATCTCGTTTGCAAGTGATGCATTGACTCTTGGGTACCGTGCTCAGCACATAGTATGATTATTATAGCTCGCTCATTAGCCGCTGCTAGCCCAATAGCAGGATGGGAGGGAGCTCAGGACTGATGTGTGCCTGTTGTCATTATTTTAACATGACACTTACTGCTCTTTGACTTTCCGTTGTTCTCAGTCCTAGGTCATACTTACCAAGTGTAGAATTTCTTAGCTAGGGACAAATATCTGGTACTTGTTTTCATGCTCTAGATGCAAGGAGGGAAGCGAGGGTAGAGAAAAAAAACTATACTTCTACAGCCTGGTGCCAAAGCTGAAGTGACAATACTGGGAAATCTCTGTTTTCTTCTTCACAATCAGATGCTGGAGCCTGGTACCCCGAGAACAGCTTAGCGCTTACTGTTGAGTAATCCCAACCAAGATGATTAGGAAGGCTTTTCTCTGAGGAGTTTAACTTCTCCTAAATTAAAACAAAGGCTCAGAAAAACACTAGAGATTTCATAACTTTTAATAATGTTAATTCATGTTCCTCTCCTGTCTCCTTTTATCCATTATCCTGTCTTTATTATATACAGAAAAACAAAACAACTTTAACATATTATTTAAGAATAAGCCAAAACAATTCTACCTGCTCTTTTCTTTCTATATATTTACATTTTTCTGTGTGTGCATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTCTCGATGGTGAGATTAATATATACCAAAATTGTATAATAAGAATGGGGGAAATTTGTGGGTGGAATGTGTTCTACGGCCTCCCCTAATAATGAGCACATCTCATGATATTATGGGGGAAAATGTACCATTTGATGCATCTGTTGCTATGGTAACTGCTAGAGTTTTTCTGTCGAGGAGAGGCAGAATGCAAATGTGTAGTCCCTCTGTATCACTTGGGCATCCGGGCTGCATAAACACGGACTTCCTGTGCAGAGCCCACATGTTCCCTTCTTCACCTCCTGCCTGACTGAGGGCAAACAGACCCCCAGTGTTGCTGCGCCCCCCACCCCAAATCAAGAGTTGGAAAGAAACGAACCCTGGGAGGTGAAAGCCTGAGCCCCCTGGTCTAAAGTGGAATGTGTGTGAAGGGTCAGGCGTGCACTTTCGCTGGCTGCCTCCCACTGCTCATCTTTTGATTTGACTACCCAGTTCTGCTGTCTTCCTGACTCTGCTCCTGATGGCTACATAGATCAGCTGAGAGCATGGTGGCAGACTGTAGGTCCCTTCACAGCTTTGAGGGATCGAATCAGGGGCTTCAGAGCGTTTGCTAAGCTTCTGCCTTCCCCCAGACTCTGTTCTCACTCAACCAGTAGCATCCGGTTCTTTTTAAACAGATTATATTTAATCGTTCATTCAGTTCAGAGGTAACCTGTCTTCCCCATTTCTTTCGTCTCCGATATTTCTTTCAAAGTAGTTTTCCCCCAGAGTCAGCTTTTAAGTCCCCAGTTTGGGGAATGCTGATGCGCTTGTCCACGTCACCGGGATAGAGCAGCACTCAGGCTGCACCTTTATATCAAGATGGGATTTTCCGAACAAAACAACCCTGTACCAGAACTGTTTCTCCCTAGCAAGCATTTCATCTTAAGAGTGCTTTAAACATTGCGAGTGACTTCCTTGGCTGGAAACAGTCTTGGCATTATGGACTTTCTGTTGGTCCAGGTGGGAAATGAGTTTCCTAAGCAGACAGGAGAAAATGCTCTCCCATTTTGGGGCAGGGGGATGAAGAAGTGAAAATGATGTTTCCGGTCCCCCTCCCCATTTCCTGCACATTCATGTAAAAATCAGCACCAAGCTTCCAGCACTTTCCCCTCTCATTGGTTTACTTCATCCATGTTTGTCCCTGTGGGGTCTGTCATAAATTAACAGAGGAGAGAAATGTGGCAGCGTAGCCCTGGTGATTGACAGACTTTTCCAGTTGGCAGGATCCAGGCTTCTGCCTTTTCCCTTTCTTCCCTGGTTGCCTGCTTCCCTCAGGACCCCCTCCCCCCATCTGTTCCCCCCTCCAGCTTGTTTCACAACCCTTCCCCCAGTCCCAGACCTATTCTCAGCACTTCTTAACAAATCTCTTTAAATTCTACTGACTCATGCTTCAGTTCCAGGTCTCCTCAGAACTCTTGACTATTTTAGAGACCTGCGACTTCTCAGCACCTCCCTCTGCTAGACTCCCCACTCCTCTCTCTCATGCCCTGGAGGGACTCCAGGCCTTACTACTTTGACCCTGAGGAACAGTCCCTGGGAAATGTACAGTTGGTGGTCCAGGGCTCCCTTAGGGTTGGGATGGGAAAGGTGTTAGAGCTGAGAGAATGCTGGCCCCTGGATGCTGCATGCATCCTAGTGTTGCAGAACAAATCAGATTGTTCTGTCAGAGTTGTAAGAAAGGGTCACCATGTCTACTCTCGGGGGGAGGGGCGGGGGGGAGGGTGGGTTGTCCATGATTACCTTTTTTAAACTTTTCGTTAGGAAAACCTGGAAATATGCATTAAAGAATAGGAAGAGTTTGGGAAACTAGCTATAACTCAGTTTCAGCTATCAGCGCCTGCTCATTCTTACCTCTCTCAGCTCTTCCTTATTTCTCTTTTTCTTGTGTTACTTTTAAGCAAATCATGGTGGTTCTCCGTCCATATTGCTTATTTGCGATCAGCACGTTTGAAATCTCTCCCTCATCCAGCATTTCTCACCTCCAACCATAAAATTATTTCCATTGCTGCTTCATAACCGTCATGTTGTTACTGCTGCGTAAGCCTCTGTGTCTTCCAACGGTCTTAATGACCCCCGTGAAAGGGTCATTCAACCCCCAAAGGGGTCACAACCCACAGGTTTTGATCTACCACCCATTTCCTGTATCGTCCTTCTGTCCTCACCATGTGTCCCCATCAGTCATCTTAGTAAGAAAGGCTGCTGTCAGCTGTCTTATCAGCTTACACCCTTACTGTAAGATTTTATTATCTTCTCGGGCCAGGCATCATGCCACAGACCTTTAACCCCAACCCCTGGGAAGTAGACAAAAACACCAGAATTCAAGATAATCCTTGGCTAGAGAGTGAGTTTAAAGCCACCCTTTTGCTAGACACTGCCTCAAATATCATTCCCCTTCTGCACATCCTCGGGAATAAACCCTGTGCCTGAAGCCTGAAGTAGCGTTTTTGGGGGATTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTATACTGCTATGTGGAAGCTGACCTGTAAAATTTGCAGTTTGCCCAAATTTTATCAGCTTAACCAAAGGGCTTTTCGTTTTTTGTTTTTTGTTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTGCTGTTAGTTGCCCCTCAGAATTACTGTTCTGTCTTTATCATCCTGTGAGAGGGTCCTTCAGAATTGAATAGCGCAGATTGCCACCAGTTCTTGAAAATAAAAATAAAACATGTTCTGTTCCCTGAGAACATATTAGAAGTTGACTTCAAAGTTTCTTAAATGCTTTTTATTAATCTTTTTTTCCCCACTGCGTGAATCACAGTTGAATATACCTGAATACCCCTGTGTATGTGTGTGGGTTTTTTTTCTCTTAATTTAAACATTAATAACTCAATTATGCTTTAAATTTGAAATCTGATTTCATTATCCTATTCGAATTAG
Seq C2 exon
GGTGAGGCACTCCGGCAAATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCAGGAAGAAGAGAGAGCCTTACCAGCTTTGGCAATGGTCCACTATCACCAGGAGGACCCAGCAAGCCTGGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]