Special

GgaINT0021976 @ galGal3

Intron Retention

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19106858-19110208:+
Coord C1 exon
chr12:19106858-19106969
Coord A exon
chr12:19106970-19110178
Coord C2 exon
chr12:19110179-19110208
Length
3209 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CCCCTCTTTTTTTTTCCCAGCAG
3' ss Score
8.42
Exon sequences
Seq C1 exon
ATTAATAAAGCATACTAAACAGCTGCTAGAGGAGAATGAAGAGAAACTATGTATTAAAGTATTACAGACACTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq A exon
GTAATGTAATTGACAGTTTGTCATTCTATGTTCAGCACTGCCTTTATTATTCAGTAAAGGAAAATAAACTTCTGGCTTCTTCAAGCTCTGTTTTGTATGTGTAAGCATTTCTGTGCTGGAGAAGGAACAAAAAAAATTTTATTCAGCTAACAACTTCAGATAGAATTGAAAAGATGACCCTGGTTTTGTTGTTTTCTACTTTAAATTTGCAAGTTTAACTCCTAGTTCTTCCATTGTCAGCAACTGCTTACCTTTTTATGATGAGTATAACATCTTATCTGTTTTTTTGGGTCCAGGTGACACTTCATCAGGTCACATACACTTGCAGTAAGAGGATATTTAGTGGTTTGATTTTAATTTACATACGTCTGAGTCATCATCTTGTGAGTTACAGATAGAAACTGTCTGTACAGCCACCCCTGTATTTTTCTTTTTCTTCTTTGCCTTTCCTATGTACAGCTCCTTTGTCTAATTGAGAGGGATGTTTTCCTGTAGCTACGGACCAGTTCTCTGAATTGGAAGTGCGTGTCTATGCCAGTATGTTTGGGAATCTGGATGTTACTGCAGTCCATGTCAAACTCCCAATCTATAGCATCTCCTACATTTTTTTAAGCAATCCAGCCTAACAACATGCCACACAGCAGGCACGCAGTACAGCCTCTGGGTGAACGTGCTCGTGAAGAGGTCAGAACTGGCAGCTGGGGCTGGGAAGCAGTGGTGTGGAAGGATGCTCCCTGCAGCTGGGAGCCTGTGCCTGGGAGCAGATGGTGTCTCGTGTCTGATGAGCACGTGCTGTAGGGTTTGAAGTTGTTGCACAGTGCTGGATTCACAGCCCAAAAAGGCAAAAGCTTTAGAACTCGTACAGCTTCATAATACAAATATTAACTGTTTTGTAGCTATAGCTGCAGCTGTGAGGATGGAAGAAGCTGTGAAGGCAGAGGAAGCTGTAGCATCACTAGGGTGAATTACCACCTGGGATGGCCCAGACAACCTCTGCTTTGTCTGGTGTAGCTGGAAAGGAGGACGCAGGAGCAGGAGGACGCTGGAGCAGAACACAGTGGTCTGCTGCCCGTGCAGCAGGAGGCAGGGACCTGGAGGAGCTGAGAAAGCAAACACAAGAGGGAGGCTGCAGGCATGTGGCTGTGCACGTGCACGTGTGTGGGCTGCAACCCGAGTGCACCCAGCTGAGCACGCAGCAGGGCGGGATGGAAGGAGGCTGCTAGCAAAGTGCCCAGAGGGCAGGGATGGTCAGGGCGTGCTCCCTTCCCATGTGCTGCACCTCTCAAGATCCAGCCCACCTCTGGGCTGTGGCTGCGTGTTTGTTCTGCAGTGCTGTGCTGCTAAGGAATTGTCTTCACTTTCCTGTAGCAGTGTGTTTTGGTAAACTCACTGACTTTGGGAAAGGGTCCTAGTACACTGCAGGAAAGAAACATGCATAGGTAGGATGAGAAGGGGGGAGCAGATCGGTAGGATGGGGCAGCTGCAGCTTCCAGCTTGTTTTCTATGAATTGTCCTCCTTTGCTCAAGTGTCGGGGTCCTGTGCTGAGTCACAACCCTCTCCCTGCAAAGCCCTGAGACAATCTTGGTACAGCTGGAAGTTTTCAGCCCTGATGTCCCTTTATGAAGACGTGCAGTACGGTGCAGGTCAGGTCTGGAAGGGGTTGGCTGCAGCCAGCACAAGTCGGGCTGCTCTGGCAATAGGGAGCTGGGTGAGGTGATCTGTTTTAGCAAGTGTTGGTGCTTGCTGATACTTTCTCGTGCCCAAAGCAAGGGGATATAAAAGTTGAAAGAGAATCTCAGATTTGGTAGTAGACTTTTAGTGAATTTATCAGTGTACATTCCCCCTTTAAAGAACAGCCAAGAGAGGCTCTCCAAGGTTGGCTGAAGTAATATAAATGGTGGAAATTATACATGAAAAAAATAAGAGCTTTGAGTTCTTAGTGCAATATGCCAGTTGGTTTTTCTAAATGGAAATTCATTTACAAGCATACCTTAGAATTTTACAAGCTTGGGTAAAGTGGCATCTCCAGAGGATGCAGTTACTGGGACGGACCGTTCTGTTGGAGAGCCCAACGTGATTCTCAGGCTTCCAAGTGTAGAAAATGCATTACAGCAGATTGGTTACATAATGTAAAATAAGAACATCTCTTGAAGTAGAGCTCTGAGTATGAGAAAGCAGCTGAGTGCTTACAGACAGACTGCTGGCGGTGTGGGACAGCTGCTGCCTGGGTATGAGAGCACAACCATGGGCTCTCCCCTGTGCTCATATAGCTGGATTTAATCACCACTTATGAGACAGTGCCTTTGGTTTTGCAGTCATCCTGAAGCGTAAAAAGGAAGAGAATCTTATCCACGCATTCTAAAGCTAGGGGGCCTTACATGCAGGCAGCAGATCTTAGTGCTGTGAGCAGTGTGCCGACCATCCGCACCGTGCAGCTGTAGGTGAGGGGTTGCTGCAAGCAGTGCCCGGCAGCAATGGAGCTCAGGGCCAGCTTGGGCACAGCATGCGGTTCTGCTGGCGTGCTGTGTGCTGCTTCTGGAACAGTCGGATTTAGAGAAGGCCCCACTCCTCTCCCACTGAATCTTCCAGCACAAACAGTAGAAACGCTGCACCCTCCTGGCCTGCGTGCTGTCCCTTCCGGAGGTGGAAACGTAATGAAAGCACAGCGCTGCCTCATCCCATTAGCTGAGGCCTTCATTAAACAGCTGGGATTCCTCTGCAGCATGCAAAAAGCGTGGTGAGAGTGCAGATGCACAGAAGCCCGTGGGAAGGTTCGAAGCTTTCCATATTGCTGAAGGCTCCCGCTCTTGGCACGCGCTCAGGCGCTCTCGGGGATGGGGAGCGCACCGTGGTGCATTCAGTGTGCTGAAAGCTCCGCTCCATTGACAGTGTAGGCTAGAGCCACTGTTTTTACCGAGCTGAAACATGTCATTCATGCACCTCATCCTGCTGCCTACCAGACGATGAGCTCAGCTCTCCAGTTGTTAGATTTCAGAATTCTGCTCCTGTTCCAAACTGGAAGCCCGGCTGTTGGGCTCCCAGCTCAGCTGCCCTCGCACGCCTGGGGCAAAACAGTGCAGTGAAATAAGCACAATGTTGGGTTATGGTGTCAGTGATAAATGGTTGGTAGGATACTAATGTAAGATTTATTTGTAATTTCTCTTACTAATGCTTGCTTTCAATTCTTCCCCCTCTTTTTTTTTCCCAG
Seq C2 exon
CAGATTACCATTGAATTGGATAATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.092 A=NA C2=0.900
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]