GgaINT0021976 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19106858-19110208:+
Coord C1 exon
chr12:19106858-19106969
Coord A exon
chr12:19106970-19110178
Coord C2 exon
chr12:19110179-19110208
Length
3209 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CCCCTCTTTTTTTTTCCCAGCAG
3' ss Score
8.42
Exon sequences
Seq C1 exon
ATTAATAAAGCATACTAAACAGCTGCTAGAGGAGAATGAAGAGAAACTATGTATTAAAGTATTACAGACACTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq A exon
GTAATGTAATTGACAGTTTGTCATTCTATGTTCAGCACTGCCTTTATTATTCAGTAAAGGAAAATAAACTTCTGGCTTCTTCAAGCTCTGTTTTGTATGTGTAAGCATTTCTGTGCTGGAGAAGGAACAAAAAAAATTTTATTCAGCTAACAACTTCAGATAGAATTGAAAAGATGACCCTGGTTTTGTTGTTTTCTACTTTAAATTTGCAAGTTTAACTCCTAGTTCTTCCATTGTCAGCAACTGCTTACCTTTTTATGATGAGTATAACATCTTATCTGTTTTTTTGGGTCCAGGTGACACTTCATCAGGTCACATACACTTGCAGTAAGAGGATATTTAGTGGTTTGATTTTAATTTACATACGTCTGAGTCATCATCTTGTGAGTTACAGATAGAAACTGTCTGTACAGCCACCCCTGTATTTTTCTTTTTCTTCTTTGCCTTTCCTATGTACAGCTCCTTTGTCTAATTGAGAGGGATGTTTTCCTGTAGCTACGGACCAGTTCTCTGAATTGGAAGTGCGTGTCTATGCCAGTATGTTTGGGAATCTGGATGTTACTGCAGTCCATGTCAAACTCCCAATCTATAGCATCTCCTACATTTTTTTAAGCAATCCAGCCTAACAACATGCCACACAGCAGGCACGCAGTACAGCCTCTGGGTGAACGTGCTCGTGAAGAGGTCAGAACTGGCAGCTGGGGCTGGGAAGCAGTGGTGTGGAAGGATGCTCCCTGCAGCTGGGAGCCTGTGCCTGGGAGCAGATGGTGTCTCGTGTCTGATGAGCACGTGCTGTAGGGTTTGAAGTTGTTGCACAGTGCTGGATTCACAGCCCAAAAAGGCAAAAGCTTTAGAACTCGTACAGCTTCATAATACAAATATTAACTGTTTTGTAGCTATAGCTGCAGCTGTGAGGATGGAAGAAGCTGTGAAGGCAGAGGAAGCTGTAGCATCACTAGGGTGAATTACCACCTGGGATGGCCCAGACAACCTCTGCTTTGTCTGGTGTAGCTGGAAAGGAGGACGCAGGAGCAGGAGGACGCTGGAGCAGAACACAGTGGTCTGCTGCCCGTGCAGCAGGAGGCAGGGACCTGGAGGAGCTGAGAAAGCAAACACAAGAGGGAGGCTGCAGGCATGTGGCTGTGCACGTGCACGTGTGTGGGCTGCAACCCGAGTGCACCCAGCTGAGCACGCAGCAGGGCGGGATGGAAGGAGGCTGCTAGCAAAGTGCCCAGAGGGCAGGGATGGTCAGGGCGTGCTCCCTTCCCATGTGCTGCACCTCTCAAGATCCAGCCCACCTCTGGGCTGTGGCTGCGTGTTTGTTCTGCAGTGCTGTGCTGCTAAGGAATTGTCTTCACTTTCCTGTAGCAGTGTGTTTTGGTAAACTCACTGACTTTGGGAAAGGGTCCTAGTACACTGCAGGAAAGAAACATGCATAGGTAGGATGAGAAGGGGGGAGCAGATCGGTAGGATGGGGCAGCTGCAGCTTCCAGCTTGTTTTCTATGAATTGTCCTCCTTTGCTCAAGTGTCGGGGTCCTGTGCTGAGTCACAACCCTCTCCCTGCAAAGCCCTGAGACAATCTTGGTACAGCTGGAAGTTTTCAGCCCTGATGTCCCTTTATGAAGACGTGCAGTACGGTGCAGGTCAGGTCTGGAAGGGGTTGGCTGCAGCCAGCACAAGTCGGGCTGCTCTGGCAATAGGGAGCTGGGTGAGGTGATCTGTTTTAGCAAGTGTTGGTGCTTGCTGATACTTTCTCGTGCCCAAAGCAAGGGGATATAAAAGTTGAAAGAGAATCTCAGATTTGGTAGTAGACTTTTAGTGAATTTATCAGTGTACATTCCCCCTTTAAAGAACAGCCAAGAGAGGCTCTCCAAGGTTGGCTGAAGTAATATAAATGGTGGAAATTATACATGAAAAAAATAAGAGCTTTGAGTTCTTAGTGCAATATGCCAGTTGGTTTTTCTAAATGGAAATTCATTTACAAGCATACCTTAGAATTTTACAAGCTTGGGTAAAGTGGCATCTCCAGAGGATGCAGTTACTGGGACGGACCGTTCTGTTGGAGAGCCCAACGTGATTCTCAGGCTTCCAAGTGTAGAAAATGCATTACAGCAGATTGGTTACATAATGTAAAATAAGAACATCTCTTGAAGTAGAGCTCTGAGTATGAGAAAGCAGCTGAGTGCTTACAGACAGACTGCTGGCGGTGTGGGACAGCTGCTGCCTGGGTATGAGAGCACAACCATGGGCTCTCCCCTGTGCTCATATAGCTGGATTTAATCACCACTTATGAGACAGTGCCTTTGGTTTTGCAGTCATCCTGAAGCGTAAAAAGGAAGAGAATCTTATCCACGCATTCTAAAGCTAGGGGGCCTTACATGCAGGCAGCAGATCTTAGTGCTGTGAGCAGTGTGCCGACCATCCGCACCGTGCAGCTGTAGGTGAGGGGTTGCTGCAAGCAGTGCCCGGCAGCAATGGAGCTCAGGGCCAGCTTGGGCACAGCATGCGGTTCTGCTGGCGTGCTGTGTGCTGCTTCTGGAACAGTCGGATTTAGAGAAGGCCCCACTCCTCTCCCACTGAATCTTCCAGCACAAACAGTAGAAACGCTGCACCCTCCTGGCCTGCGTGCTGTCCCTTCCGGAGGTGGAAACGTAATGAAAGCACAGCGCTGCCTCATCCCATTAGCTGAGGCCTTCATTAAACAGCTGGGATTCCTCTGCAGCATGCAAAAAGCGTGGTGAGAGTGCAGATGCACAGAAGCCCGTGGGAAGGTTCGAAGCTTTCCATATTGCTGAAGGCTCCCGCTCTTGGCACGCGCTCAGGCGCTCTCGGGGATGGGGAGCGCACCGTGGTGCATTCAGTGTGCTGAAAGCTCCGCTCCATTGACAGTGTAGGCTAGAGCCACTGTTTTTACCGAGCTGAAACATGTCATTCATGCACCTCATCCTGCTGCCTACCAGACGATGAGCTCAGCTCTCCAGTTGTTAGATTTCAGAATTCTGCTCCTGTTCCAAACTGGAAGCCCGGCTGTTGGGCTCCCAGCTCAGCTGCCCTCGCACGCCTGGGGCAAAACAGTGCAGTGAAATAAGCACAATGTTGGGTTATGGTGTCAGTGATAAATGGTTGGTAGGATACTAATGTAAGATTTATTTGTAATTTCTCTTACTAATGCTTGCTTTCAATTCTTCCCCCTCTTTTTTTTTCCCAG
Seq C2 exon
CAGATTACCATTGAATTGGATAATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]