RnoINT0076654 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140450442-140455879:+
Coord C1 exon
chr4:140450442-140450553
Coord A exon
chr4:140450554-140455846
Coord C2 exon
chr4:140455847-140455879
Length
5293 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CCTCCTTTCTTCTCTTCCAGCAA
3' ss Score
11.87
Exon sequences
Seq C1 exon
GCTCATAAAACACACCAAGCAGCTGCTAGAGGAGAATGAAGAGAAACTGTGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq A exon
GTACTGCATTTTATATTCATGTTCAAATCATGCTGTGTGTTAAATTTAAGGTTTGGGAGTGCTTGGAAACCCCTGAGTTACTGGCTGGTAGTTTATTTAATTTTTAAGTTTCCTTCTCCTGTCCAGAATGATAGCTGAATCATATGACTGTCTTCCCCACAAGTCAAATATAATTATTTGTCTCTCACAGACATCTTGCCACACAACCTAATGTCAAGGAAGTAGTTCTAAGGCCTTTCCTGGTGAACTTCCCAGGGAGACGTAGAGTCCTGTGTATCAGTCCGGATCTGGGAATGTGCGTTCCAGCCCAGGACACCCGTGGGCTGACTTGCCTCTTTCTGCTGGGTATTTCACAACCCTTCCAGCACCTCAAGAAACTCCCTCTAATTCTCACTGGAAGTAAGACAAGCAACGCATGTCACCACTTCTGATTGAGATTGTGAAATGGACAATTCCTGTGACCTGGTACTTCTTGGTAGATGGAGAAAGCAGGCATTTGGCATGTGTCCCTCATGGGGCATGGTAGGGCAAGAACGATCCTGGTGCTCATTGTCTTGTCCAGCAAGGAATCTTAGGCATGAGTCTCAGTGTCACCAACCTTCACTGGGTAGTTAATAACACCTACTAACTGCTAGCTACTCTTACCAATGGTTTCTGATCTCGTTGTCCTTTCAGAAAACCCAGTAACTCACTGGTCGGCTCTGGGAAGAAGTCTTGGTATTTAAACCACTTCTCTCCCTGTCAGACTAGAGGATGATAACCAAATTATTATAATTGACTGCTGAAGTATCACCCTTTAGCCTATGCAAGGTCTCTCACTATAGCTTACCTAGGAAATGAAGCTCCCTGGATAAGAACAAGAAAACAAGGTGGAGTGGTGGCCCATGGCTTTAATTTCAGCTCACGGGAGGCACGGGGAGGCAGATCTCTTGAGTTTGAGGCCAGCCTGATCTACACAGTAAGTTCTAGGACAGCCAGTGATACACAGAGAATACATATTTCAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTGTAGTTGTTACTGTATAGCCCTCTGCTGTCTCCACATCACTAGGCTTAAATATCACTTCAGCTGAGGCTGTACCCCTTTTGGTAAGATGCTTTCCTGGCATGCACAAAGCAGGGCTTGACACCCTGCACTGGCGCTCATACTGGATGCATGTGCATCTTGGTGCATGCCTGTAGTCCTGGCACTAGGGAAATAGGAGGCAAGTTGACCCGAAGTTCAGGGTCATTCTTGTCTGCACAGAGTTCCAGATAAGCCTGGATCACATGACATCCTGTCTCAAACTAACCCCACAAGCCAACATATATATAAACTTCATTCTGAATGTTTATAGTATATAAATGTAAAGGTGAAGGCTTGTTCACTAAATAAGGATTTTGTGGACATAATGTGATACGCAGAAGCTTATAAATATAAATGGTAGATGCAAAGCGTCTTAGTCCAGGTAGAAACAATGAGATGACTCGCCCCTGGGGATACACATGGGCACCTGGGTAGGTTTTAATTGAAACAAAGGGGAAAGGATGGGAGGAGAGACACCAAGGGCAGCTTCAGAATGGAGTAGGCAGAGAAAGACTGACAGAGAGTACGGAATGCCCAGAGGTTAGAAGAGTTTCTTGGGCCTCAGTTCACTTTCCTTTGTAGCTGGTAAAGAAACTAGCCATGCCCAAGCCCTGAGGCTGACATCTCTTTCCAGACTGCTTGGGACTGTCCTCCCCACTTCAGGAAAATGGGAACATTATATGCTAGAATAGGGAAGACCAGAAAACAGGAAGATGCTGTAAGAGCCTGCACTACATACATCCTTGAAACTTCTGGCCCTGGTGGTTTGGCTATTTGAAAGTGCTACTTACCCATTTGTATCAATGGATCTTTGAAATGGGCAGGGAGCATGAAAGTGTCTCTGCTTCCCTGTCTGGTTAATAACTTGTCTCACTAAGATTCTTTAATGATATTTCAACAGTTGCTACCTGTTCTTGCTATACTGAAGAAGCACAACACATAGGCAGGCCAATATTTTCAAGAGTAGAAAAACGCACAACCAAAGCCATATCTTTTTAAGGAAACCAGTTGGCTTGGGATTTTATGAACAAAGTTGTCCCTGGCCCTGTGCTGAGGACTCTCCCAGGTGTTCATCACACTTTTCCTGCTGGTTGCCCTTTGTGTGGGATGTTGTCATGGCTTCCACCCTTCTGAGGGTATTTGCTACTGTCCTTCTTCCCTGCCCTTAAGTCTTAATAGCCACAGAATCAGATCTAGAAGGGACCTCAGGCTTCCTCATTAACCCTCCCTTGAGCAGAAGCATCTGGGCTGGGATGAAATATCTGCCCAGGATCACATGGAGACTCCATGGGGTCAAGACTAGACCCCACCCAGTCTTGCACATGCTGGTACACGCCATTTCCTGCTTTTCTCATGCTGTGTTTGTCAGTTCAGCCATTTCTGTATCCTTTGCCCTGAGCTGCAGTTCCTGTGGATGAAGAGACTTTGTGTACCTTTGCTCATCTCTGCCTTTTCATTCAACTTCAGGGCTTTATCAAGGTCACAGATGAGAAAGAAATTGGAAACAATTCTTATTACTCTAGCCTAAAAGCGTTGGTATTCTCGTGGGTCTACTTTCATAAAGGGGAGAAAAGACCATTGAAAAGAATGACTCGGATTACCAAGTAGATTCAAATATACCATCATTTCTCTAAAGCTGAATTACAGGTTTTAATTACCAGATACAACATTTACTAACCTCTTGTGTAACAGTCTCCTATCTTATCTATGGTCAGCCCCAGAGATAAATATCATCATTGTTATTTTTAGACTCAAAGGTGAAGACATAGAAAAGTTCACACTTTTTTGTCTAGGATCATACAGCTAAGAACAAGCCCCACGAACATAAACCTAGATACCTAGACTTTGACCAACACCAAATAAGTATGCAGATTAACTACACTCATGCGCTTTGACGTTAACCTGTAGCCTTAACATATGTTTCATTATGGTATATGATTACCATATAAAAGACAGGAGCATTAAATGTTGCAGTATATCTAGGGTTCAGCTCAGTTCTGATTTGCCACCCAATTGTAAGGTAAGTTTATAAATTCTGCTTACCCTAGGCCTGTGGTTTTGAGTAGATATCAGAATAGTGATTAGTGAGTGTTTAGCTCACAAAATATGCTCATCCAGGAAATATCAAAGGTAGGGATTGTTGTGTTACAGTGATGTTACTATAGTGAAATACCCGAGAGGGGCTCTGTAATAAAAATGAGATATGTCTATGGTAGAATGTTGGCTTAACAGACACTATCCCCACTACCTATCTACCTTCCTACCTACCTTAATTAATTAATTAGTGAACTAAAATAAATAAATAATAACTTATAGTTTGGGAGCCTGGAACTCTAAGATTTGGCAGCCCCATTCATTTGTTCTCTGGTTATGGTCTAATGTTGAGTAGTTGAAGGAGTAAGAAATCACATTCTGAAACAGAAAGCCAAAGGAGAATTGAGAAATCCACCTTACCCTTACAGCTAACTTTCCTGAGAACTAACGCAGGGCACAGCTTGTAACTAACACCCTTCACCCTCTGATAACCAGAGAATCTGAGGAAGGGAAACTGCCTAGAGCTTGAGGTCAACTTGGGCTACGTAGAGAGCTCCAAGCCAGTGTGGGCTACCGAATGAGATCCTGTCCCCTCCCAATCCAAACCCAAACAAAAGGGAAATAAAATAAACCAATCCAAATAGCAAATTTTAGAGCCATACAAGGACAGTGCTCTGTGTGTGACCTTGGGCCGTCCCCCTAGGTCTTACCAAGGCTTGTCACCAGTGAGGTTCAGTGTCCCAGTGTGTGAACCATGAGAATACACTCAAACCCTCTCCAGACCTTTACAAGCACTCAGAGAATAAAAGAAAGAAAGAAAAAAAAAAAACCCACAGCTTCACCTGTTATGTCCCTGAATGCAGAGAATGAGGTACTAAACATAAAAATAAATAATATATGAAAAATGATTGCTAATATGGTGTTGAAGCATGTTTTGGTAAGAAACTTTCCCCATCTTTGTATCCTGTATCTTCAAAGAGAGCAAACTTCAGAATGATATCGGGACTGTTAAGTACTCTGCATATGAAATACCCACTACAGTTTGCTTTCAGTGTATATTAAAACTCACCCTACAGCTCAGAATCATAAAGATTGCCCTGAATCTCTAACTCACAGAAAATCTTGATCCTGTTTGGAAAAAAAAATGGCATAGTTATCTTAGGTACTGGCCTCTCTCAGGTCACAGTATGTTTTTATTGAGCTGGCCAAGGTTTGTATTATTGGTCAAAGAGCTTCGGAAGAAATTCAGAGGCCAGGAACTAATGTAAAAGGATATGTCAGAATTTAACATTCCACTTCCCATTCTGAATAATCCTTGCCTTAGTTCTAGAGAGAGCCAACCTCAGGCAATGCCAGGGGTTCTATTTCTGACAATTGTCAGTTCTCTGTTAATCACTGAAGCTCCTCCATTCTGGATGAATAGAGTTTTGGCCTTTCTGGCTACTAGCATTTCTGACAAGACTCTTCACTTTGCAGAATGAAATGTAACTGAATTGTAAATCAGTCAGCTATCCTCAACCCAGTGTAACTGAGATAATTCTCTTGTGATTTTTTTTCTAATTTCCATAGGGTTGATGCCAGTGCACCCATGTTAGTTATCCAACTGGGGCAACTGGTGCTTCTCGGTCACCCATGATCCCAGGTTTTGAGATATGGTTAGGCTCTGCCTCTTGAAGTTAATCCCAAATCTGACAGCACAACCGTGGTTTGGGCTCCCGACCCTCAATAAACCAGTCAAGTGAGTTAAGAGTACCCTAGTGTTTTGGCTTATCCCTTCCTAACTACTTCTGAAAACCTTAGCTTGGGGAATTGGCTCCTGGTCCCACTCAGTTCAAGTTTTCTTGTTTATAAGCAAGTACAAGGCTGTCTCCATGCTTGGATGGTGGACTGGTGAGGACTGCTGCTCATTGCGTGAATAAAACATGGCACATACTGCATATTTGGTTCCAGAGCAGATGTCATTTCAAGCTGTGACATTGTCCACAGTGTGTAAACTCCTTCAAATGGCCACTGCCCATCAGCATCTGAAGGTGCCATGGTTGAGCACGACCATATCCTTGCAACTTTCTGACATTTAGATTTCTTGTGTTTCCTTTCCTAACCAATCTTCTCTTTCTCTCCCCTCCTTTCTTCTCTTCCAG
Seq C2 exon
CAAATTTCCATTGATGAATTGGAAAATGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]