DreINT0083652 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35636928-35638834:-
Coord C1 exon
chr11:35638723-35638834
Coord A exon
chr11:35636964-35638722
Coord C2 exon
chr11:35636928-35636963
Length
1759 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGTATGCTCTTCTCTTCCAGCTA
3' ss Score
10.01
Exon sequences
Seq C1 exon
ATTAATAAAACATACTAAGCAGCTTTTAGAGGAAAATGAAGAGCGCTTGTGTATAAAAGTCCTGCAGACACTTCGAGAAATGATGACTAAAGACCGAGGCTATGGGGAAAAG
Seq A exon
GTAATGCGCACACACATACACACACAATAAATCTTTCTGCGTACACAAACCTGTCTTCTGCAGGACTATTGTACATCTTGATGAAATTACAAGAATCACGTTGGTGTGTGTTACTCTATATTTATCTATTTTACCAATAAAAGTCCCGAAACAGAGCTGTGTGTTTTCACAGTACAGCCCTGTAAATCTGCTTCAAAGACCACTTTGCACATCTGACATGCTGTTTTTATAGCCTATATACTTTTTATATACATAATTGCACACAAACACACGTGTGCATCTGTTCATGAATCATGTCCTTCTAACACTTTATAAAAAATGCAGATTTTCCTAACTCGGTTCCATCCAAACATAAAAAAAATCCCCACTCCATTTCTAATGTTTTATTAGCACAAAATTAATTAACACCCAATTAACATCAACATCATATCTGAACACTTGATATTTTAGTGATAAATTTGGTTGCAAACTTTTGCTTTAAAGACCCCATGAAATCAAAGCAAGTTTTATAGATTTCTTTCCATGTCTGTTAACATTTAGTTTAGTTTGCTTTTTGCTGTCAAATATGTCAAAGGAAGAAATACTGGATTTAAAAATTTTATTTCTGCTTTTGATGTCAAATATGCCAAAGGCAAGAAAACTAGACAAATTCTATATTTTTTATATAATTTAATTATTTTTTTTATTTTTTATTTTTTTTAATGTGCCAAAGGAGGGAAATCTGTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATTATTATTTTTTTACTCTTTATTTTATAAATATGCCAGAGGCAAGAAAACAGGACTTATTAAATGCATATTTATTTATTTATTTTTATATATTATGTATATATTTTAATTTATTTGTTTGTTTTATTTCTTTTATTTATTTATCAATTTATTTATTTTTTTCAAATATGCTGAAGGCAGGAAAACATAAAAAAATGTATTATTTAATTATTTGTTTTATTTTATTTATTTATTTATTTATTTTTGTCAAATATGTCAAAGCAGGAAAAAGTTTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTCAAATATGCTAGAGGAAAGAAAACTGGACTTATTACATGCATATTTATTTGAATATTTTATATCTTATTATGTTTATATTTTTATGTATTTTTTGTTTTGTTTTATTTATTTTTATTTTATTTTATTTTAAATATGCCAAAGGCAGGGAAATTAGACAAATCTTATTACTCTATTTAATAAAATTTTATTATTTAATTTAATTAGTTATTTAATTTATTTATTTATGTCAAATATGCCAAAGGCAGGAAAACTAGCCCAATTTTATTGTTTAATTAAATTAAATTAAATACAATTTTTAAATTAAATTATATTTTATGTCAAAAGAAGGAAAACTGGTCTCTTAAAGCAAATGTTTTTATTTATTTAAGCAAATATTTGTATTTATTTAATTTCAGATCAAATACAAATAATAATAATAATAATAAAAACCTGCATTTATCAAGTGAATTCATGGGGTCTTCAATTTCAATTGCCCGCAATTTATCACATCTTAGGTTAGCCACTAATGCTTTAAAGTCAAATGCTAATAAATCCTGTGTTATGTCACTAACGAACATTGTTTGGCCTTTTCTTTTTTTTCTTTTTTTTTTTTTAAAGCCTTTTCTAATTTCTTCCCTCACAATACTAACGTTGTATGCTCTTCTCTTCCAG
Seq C2 exon
CTAATTGCCTTTGATGATGAGCTGGATGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]