MmuINT0084448 @ mm10
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108417889-108423365:+
Coord C1 exon
chr6:108417889-108418000
Coord A exon
chr6:108418001-108423332
Coord C2 exon
chr6:108423333-108423365
Length
5332 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
CCTCCTTTCTTCTTTTCCAGCAA
3' ss Score
11.6
Exon sequences
Seq C1 exon
GCTAATAAAACATACCAAGCAACTGCTGGAGGAGAATGAAGAGAAACTATGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGACAGAGGCTATGGAGAGAAG
Seq A exon
GTATTGCATTTTATATTCCCGTTCAAATTATGCTGTGTATTAAAGTTAAGGTTTGAGAGTGTGTGGAAGCCCCTTAGTTACTGGCTGGCAGTTTAATTTTTTTTTTAAAGCTGTTTCTCTTGTCCTGGATGATCACTGAATCATATGAGTGCCTTCCTGCAAGTCAAATATAAATATTATTAGTTGTCTCTCATGGACACCTCACCACATAACCTAATGCCAAGGAAGTAGTTCTAAGTTCTTGCCTAGTGAACTTCCCAGTGAGGCATAGCGTCTTGTGTATCAGTCCGGATCTGTGGACTTGTGTTCCACCTCAGCACACCTGTGGGCTGGCTTACCGCTCTCCGATGGGGATTTCACAATCCTTCCAGCTCCTCACGAAACTCCCTCGAGTTCTAACTAGAAGGAAGGCTTGGTTTCTTTGCATGTCACCACTTCTGATGGAGATTGAGAAATGGACAATTCCTGTGACCTGGTACTTCTTGGTAGATGAGAAAGCAGGCATTTGGCATGTGTCCCATGTGAGGCACAGTAGGGCAAGAACAATCTTGGTGCTCATTCTCTTACCCAGCAAGGAATCTTAAGCATAAGTCTCAATGCCACCAACCGTCACTGGGTAGGTAATAACACACTCACTAATTGCTAGCCACTTTTACCAATGGTTCCTGGTCTCGCTGTCCTTTCAGAATACCCAGTAACTCATTGGTCAGCCCTGGGAAGAAGGCTTGGTAATTAAACCACCTCTCTCCCTGTCAGAATAGAGGGTGATAACCAAATTATTATACGTATGACAGACTGCTGAACTCTCACCCTTCAGCCTATGCAAGGTCTTTCACTAGAAGCTTACCTGACAAATGATGCTCCCCAAATAAGAACAAGAAAACATGGCAGAGTGATGGCCCACGCCTTTAATCTCAGCCCTCAGTAGACACAGGCAGGCAGATCTCTTGACTCAGAGGCCAGCACAGCCAGTGATACACAGAGAAAACATATCTCAAAGGAAAAAAGAAAAAGTAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGAAAAGTGAAGTCGTCACTGTGCCGTAGCCCTCTGCTGGTTTCCCTTTTGGTAAGATGCTTTCCCGGCATGTGCAAAGCAGGGTTTGACACCCTACACTGCATGATACTAGATGTACCTCTTGGTGCATGCCTGTAATCATGGCACTAGGGAAATGGAGGCAGGGTGACCCAAAGTTCAAGGTCATCCTTGGCTGCATAGAGTTCCAGGCCAAGCCTGGAATACAGGAAATCCTGTCTCACACCAACCCAACAGACGAAACTATATATAATTTCATTCTGAATGTTTATAGTGTGTAAACTTAAAGGGGAATGCTTGTTCACTAAATCAGGATTTCGTGGACGAAACCTGATAGGCAGAAGCATATAAATATAAGTAGTAGATGCAAAGCGCCTTAGTCCAGGTGAGAAACGATGAGATGACTTGCCCATATACACACATGGGCACCTGGGTAGGTTTTAATTGATAGGAGAAGGGATGGGAAGAGAGACACCAAGGGCATCTTTGGGGTGGAGTGGGCAGAGAAAGACTGATGGGTATCAGGTAGAAGATGCTACAAAAGAGTAAATGCCCAGAGGTTAAAAGAGTTTCTTGGGCCTCAGTTCACTTTCCTTTGTAGCCGGTGAAGAAACTAGACATGCCCAAGCCCAGAGGCTGACGTCTCTTTCCAGACTGCTTGGAATCATCCCCACTTCAGGAAATTGGGAACATTGTAAACTAGAGTGGGAAGACCACAAAACCAAGGAAGATGCTCTAGGAACCTGCAATTCATCCTGGAACTTCTGGCCCTAGTGCTTTGGCTATTTGAAAATGCTACTTACCCATTTATATTAATGGAATTTTGAAATGGGCAGGAGGCATGAAAGTGTTTTTGCTTCCCTCTGTCTGGTTAATTACTTTGTCTCACTAAGGTTCTTTGATGATATTTCAACAGGTTACCTAGCTGTTCTTGGTGTAGTGAAGAAGCACGACAGACACATAGGCAGGCCAATATTTTCAAGGGTAGAAAAACTCACAGCCAGAGCACTAACCTTCTCTTTTCAAGGAAACCAGTTGGCTTGGGTTTTTATCAATGAGGTTGTCCCTGCCCCTGTGCTGAGGACTCTCCTAGGCTTTCATCACACTTTTCCTCCTGGTTGCCCCTTATGAGGGATGTGGTCATGGCTACTACCTTCCTAAGGGTATTTGCTACAGTCCTCCTTCCCTGCCCTTTCTTGAGTCCTCATAGCCACAGAATCAGATCTAGACAAGGCTTCAGGCTTTGCCTCATTAACCCCCCCCACCCCACCCCCCTTGGGTAGAAGCACCTGGGCTGGGATGAGCTATCTGCCCAGGGTCACATGGAGAATCCATGTGGTCAAAGCTAGAAGCCCAGTTTCACTTTCCTGCCTCTCTTCTGCTGCATCTTTTGGTTCAGGCCATTTCTGTATCCTTTGCCCTAAGCTGCAGTCTCCATAGACAAAGAGGCTTTGTGTACCTTTGCTCCTCTCTCCCTTTCCGTTCAACTTCAGGACTTCATCAAGGTCACAGATGAGAAAGAAGTTTGAAACAATTCCTTATTATTCTACTCTAAAAGTGTTGGTGTGTTCATGTAGGTCTACTTTCCTAAAGGGGAGAAAAGACCATTGAGAAGAATGCCTTGGATTACCAAATAGATTCAGATATACCAGCATCTCTCTAAAGTTGCCTTACACTTTTTAATCACCAGATACAGCATTTGCTAACCTCTTGGGTAACAGTCTCCTATCTTATCTTGGGTCAGCCCTGGAGATAAATATCATCAGTGTTATTTTTAGACTCGACGTTGAATACATAGAAAAGTTCAGAATCTTGTCTAGGATCGTACAGCTAAGAACAAGGCCCCATGAACCTAAATCTACAGTCTGACTCCAGTTACCTAGAGTTTCGCCAACATATCCTAAGCATGCAGATTAACTACACATAAGGGCTTTGAAGTTTACCTATGGTCTTAACGTTGTTTTCATTATGGTATATGATTACTACATAAAACACAGGAGCATCCTATGTCTCGGAATATCTAGGGTTCAGCTCAGCTCTGATTTGCCATCCAATTTAAAGAAGCTTTCATTAGGTAGGAGGTAAGTTTATAAATTCTGGTTGCCCCAGGACCATCAGAGACATATGGTTTTGAATAGCTATCAGAATAGTGACTAGTGAGTGTTTAGCTCACTATCCACAAAATATGCTAGTCTAGGAAGTGCCAAAGGCAGGGAGTAGATGAATCACAATTGTCGCCACAGTGATGTTACTATAGTGAAATACCTGAAGGGCCTATGTTATAAAATTGAGGTAGCTTTATGGTAGAGTGTTGGCCTATCAGACACAATCCCTACTACCTACCTACCTTAATTAATTAATTCAAATGAACAAAGGAGTTATACTTATAACTTACAGTTTGGGAGCCCAGAACTCTTAAGATTGGGCAGCCCCATTCATTTGTTCTCTGGTTATGGTCTACTGTTGAGTAGTTGAAGTGAGAAATCACATTCTGAAACAGAAAGCCAAAGGGGGATTGAGGAGTCTGCCTTGCTGTTACAGATAACTTTCCAGAGAACTAATGCAGGGCGCAGCTTGTAACTAATGCCCATCACCCTCTGAAAACCCAAGAATCTGAGGAAGAAAAGCTACCTAGAGTCTGCCAACATGGGCTACAGAAACCCAAACCAAAAGAAATAAAAGAAACCAACCCAAATATCAGATTTTTAGTTCCATACAAGGACAGTGCCCTGTGTGTGACCTTGGGCCCTCCCCCTAGGTCTTACCAAGGCATGTCACCAGTGAGGTTCAACGTCCCAGTGTGTGAACTGTCAGAATACACTCAAACCCTCTCCAGACCATGACAAGCACTCAGGGAATTTAGGAAAACAAACAAACAAACAAAAAACGAATTTCACCTGTTTTATCCCTGAATTCTAAGAACCAAGTACTAAACATAAAAATAGAGAAGGTATGAAAAATAATTGCTAACATGATCTTGGAATAGGTTTTGGTATGAAGCTCCTCATATCCTTGTATCTGCTTCTTCAAAGAGGTCAAACTTCAGAATGATACCAGGACTCTAAACACACTGCCTATGAAATGCCCACTACAGTTTGCTTTCAATCCATATTAAAAGTCACCCATAGCTAAGAAAACAGTTAACATCCCTCTAGCTAAGAATTGTAAAGATTGTTCTGCATCTCTAACTCATAGGGAAATCTTCTGCCCCTTGATCCTCTTTGAAAATAACAAGCGGCACAGTTATCTTAATGCGTTCTGGCCTCTCTCGGGTCGGTTTTTATTAGGCTGACCTAGGTTTATGTTCTTGGTCAGAGAGCTTTGGAGGAGAATCAGAGGCCGGGAACTAATGGAAAAGGATATGTCGGCATCTAACATTCCACTCCCCATTCTCAATAAGCCCTGCGTTAGTTCCAGAGAGAGCCAACCTCGGGCAACGCCAGAGGTTTTATTTATTAAAATTGTCAATTATCTGCTAATCATGGAAGCTCCTGGATGGGTAGAGGTTTGGCCTTTCTGGCAACTAGCATTTCTGACAAGACTCTTCACTTCTCAGAGGAAATGTAACTGAACTACACATCAGCTAGCTATTCTTAACCCAGTGTGCCTGAGATAGCTCTCTTGTGAGGGTTGGTTTTGTTTGGTTTTAAATTCTCATTGAGTTGATGCTAGTGCACCCATGTTAGTAATCCAACTGGGGCAAATGTCAACTCTTGTTCATCAATGATCCCAGGTTTTGAGATATGTTAGTCTCTGCCTCCTGAAGGTAATCCCAGATCTGACTGAGCCCAGCTGTGGTTTGGGCTCCTGACCCTCCATAAATGAGTTGAGTACTCTAGTCTCCTGTCCCTTCCTATCTAATTCTGAAAAGCATACCCTAGGGACTCAGCTCCCGATCCCACTCCATTCAAGTTTTCTCGTTTTATAAGCAGGTACCAGGCTGTCTTGATGCTTGGATGATGGACTGGTGAGCTTTGTTGCTCAGTGTGTGACACATACTGTGGCACATGAAGCATGGCACATATGGTATATTCTATTCCAGAGCAGATGTCATTCCAAGCTGTGGCAGTGTCCTCAGTACGTAAACTCCTTCCAATGGCCACTGCCTATCAGCAATGACTATCAGTGACTATCACTGACTATCAGTGTCATGGTTGAACAGAGCCATACAGTTGCAACTTTCTAACATTTACACTCTTGTGTTTCCCTTCCTAACAAATCTTTTTTTTTCTCCCCTCCTTTCTTCTTTTCCAG
Seq C2 exon
CAAATTTCCATTGATGAATCGGAAAATGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102:ENSMUST00000032192:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types